@article{Wu2026Bridgebenchmarking,
  title = {BRIDGE: Benchmarking Large Language Models for Understanding Real-World Clinical Practice Texts},
  author = {Jiageng Wu and Bowen Gu and Ren Zhou and Kevin Xie and Doug Snyder and Yixing Jiang and Valentina Carducci and Richard Wyss and Rishi J Desai and Emily Alsentzer and Leo Anthony Celi and Adam Rodman and Sebastian Schneeweiss and Jonathan H Chen and Santiago Romero-Brufau and Kueiyu Joshua Lin and Jie Yang},
  journal = {Nature Biomedical Engineering},
  year = {2026},
  url = {https://www.nature.com/articles/s41551-026-01719-2}
}

@article{Yang2026StigmatizingLanguage,
  title = {Large Language Models Generate Stigmatizing Language During Reasoning Over Real-World Clinical Data},
  author = {Yutong Yang and Bowen Gu and David B Hathaway and Richard Wyss and Laura Marengo and Jason B Gibbons and Stanley Lyndon and Jiageng Wu and Qingyu Chen and Nan Liu and Philip S Wang and Leo Anthony Celi and David W Bates and Kueiyu Joshua Lin and Li Zhou and Jie Yang},
  journal = {medRxiv},
  year = {2026},
  doi = {10.64898/2026.08.12.26360210},
  url = {https://www.medrxiv.org/content/10.64898/2026.08.12.26360210v2}
}

@article{Wang2026Expeditedchart,
  title = {An Expedited Chart Review Process for Large Database Studies Using Natural Language Processing and Multiwave Adaptive Sampling},
  author = {Shirley V Wang and Georg Hahn and Sreedhara Sushama Kattinakere and Mufaddal Mahesri and Haritha S Pillai and Rajendra Aldis and Joyce Lii and Sarah K Dutcher and Rhoda Eniafe and Jamal T Jones and Keewan Kim and Jiwei He and Hana Lee and Sengwee Toh and Rishi J Desai and Jie Yang},
  journal = {Epidemiology},
  year = {2026},
  url = {https://pubmed.ncbi.nlm.nih.gov/41944789/}
}

@article{Zhu2026Dttransformer,
  title = {DT-Transformer: A Foundation Model for Disease Trajectory Prediction on a Real-World Health System},
  author = {Yunying Zhu and Andrew R Weckstein and Kueiyu Joshua Lin and Jie Yang},
  journal = {arXiv preprint},
  year = {2026},
  url = {https://arxiv.org/abs/2605.14227}
}

@inproceedings{Wang2026TrustworthyClassification,
  title = {Trustworthy Classification for Complex Social Surveys: A Memory-Enhanced Hierarchical Framework with Calibrated Uncertainty},
  author = {Zeqiang Wang and Rebecca Oldroyd and Yuqi Wang and Jiageng Wu and Jie Yang and Wei Wang and Nishanth R Sastry and Jon Johnson and Suparna De},
  booktitle = {Proceedings of the AAAI Conference on Artificial Intelligence},
  volume = {40},
  number = {46},
  pages = {39415--39422},
  year = {2026},
  doi = {10.1609/aaai.v40i46.41291},
  url = {https://ojs.aaai.org/index.php/AAAI/article/view/41291}
}

@article{Li2026Linguisticeffects,
  title = {Linguistic Effects of Ambient AI on Clinical Documentation: A Matched Pre-Post Study},
  author = {Yiming Li and Huiyuan Zhou and Suzanne Blackley and Joseph M Plasek and Zhuoyang Lyu and Wei Zhang and Jacqueline You and Amanda Centi and Rebecca Mishuris and Jie Yang and Li Zhou},
  journal = {medRxiv preprint},
  year = {2026},
  url = {https://www.medrxiv.org/content/10.64898/2026.02.16.26346370v1}
}

@article{Lyndon2026Transcranialmagnetic,
  title = {Transcranial Magnetic Stimulation Retreatment for Recurrent Depression: A Large Real-World Multisite Cohort Study},
  author = {Stanley Lyndon and Jason B Gibbons and Loreen Straub and Meekang Sung and Jacob C Jameson and David B Hathaway and Denise H Mulcahy and Cason Elliott and Rachel Wood and Matthew Ruble and Alejandro G Szmulewicz and Jie Yang and Rajendra Aldis and Richard Wyss and Philip S Wang and Shan H Siddiqi},
  journal = {Acta Psychiatrica Scandinavica},
  year = {2026}
}

@article{Gu2026Predictingdeprescribing,
  title = {Predicting Deprescribing of High-Risk Medications Using Provider EHR Use and Patient Characteristics},
  author = {Bowen Gu and Katharina Tabea Jungo and Julie Lauffenburger and Niteesh Choudhry and Thomas Isaac and John Zambrano and Jie Yang},
  journal = {medRxiv preprint},
  year = {2026},
  url = {https://www.medrxiv.org/content/10.64898/2026.07.25.26358746v1}
}

@article{Yang2026Naturallanguage,
  title = {Using Natural Language Processing of Clinical Notes to Supplement Structured Electronic Health Record Data for Phenotyping Smoking and Obesity in a Healthcare System},
  author = {Jie Yang and Bowen Gu and Haritha Pillai and Joyce Lii and David Cronkite and Keith A Marsolo and Rishi J Desai},
  journal = {Pharmacoepidemiology and Drug Safety},
  year = {2026},
  url = {https://onlinelibrary.wiley.com/doi/full/10.1002/pds.70415}
}

@article{Shao2026Scalablemedication,
  title = {Scalable Medication Extraction and Discontinuation Identification from Electronic Health Records Using Large Language Models},
  author = {Chong Shao and Douglas Snyder and Chiran Li and Bowen Gu and Kerry Ngan and Chun-Ting Yang and Jiageng Wu and Richard Wyss and Kueiyu Joshua Lin and Jie Yang},
  journal = {Journal of Clinical Epidemiology},
  year = {2026},
  url = {https://pubmed.ncbi.nlm.nih.gov/41232578/}
}

@article{Tang2026Efficacycognitive,
  title = {Efficacy of Cognitive Behavioral Therapy-Based Smartphone App for Smoking Cessation in China: A Randomized Controlled Trial},
  author = {Jinsong Tang and Xiaocong Liu and Shanshan Chen and Yunkai Sun and Minzhe Zhu and Zitang Zhou and Yueheng Liu and Jie Yang and Wei Chen and Yanhui Liao},
  journal = {Addiction},
  year = {2026},
  url = {https://onlinelibrary.wiley.com/doi/10.1111/add.70239}
}

@article{Zhang2026Medkgentlarge,
  title = {MedKGent: A Large Language Model Agent Framework for Constructing Temporally Evolving Medical Knowledge Graph},
  author = {Duzhen Zhang and Zixiao Wang and Zhong-Zhi Li and Yahan Yu and Shuncheng Jia and Jiahua Dong and Haotian Xu and Xing Wu and Yingying Zhang and Tielin Zhang and Jie Yang and Xiuying Chen and Le Song},
  journal = {npj Digital Medicine},
  year = {2026},
  url = {https://arxiv.org/abs/2508.12393}
}

@inproceedings{Zhou2026FinTruthQA,
  title = {FinTruthQA: A Benchmark for AI-Driven Financial Disclosure Quality Assessment in Investor-Firm Interactions},
  author = {Peilin Zhou and Ziyue Xu and Xinyu Shi and Jiageng Wu and Yikang Jiang and Dading Chong and Wang Dong and Jun Chen and Bin Ke and Jie Yang},
  booktitle = {Proceedings of the AAAI Symposium Series},
  year = {2026},
  url = {https://ojs.aaai.org/index.php/AAAI-SS/article/view/42926}
}

@article{Jin2025Impactlow,
  title = {The Impact of Low EHR-Continuity on Effect Estimates: Evidence from Two EHR-Medicare Linked Databases},
  author = {Yinzhu Jin and Angela Y Tong and Richard Wyss and Jie Yang and Kueiyu Joshua Lin},
  journal = {Clinical Epidemiology},
  year = {2025}
}

@article{Yang2025Validationtreatment,
  title = {Validation of Treatment Discontinuation in Claims Data Using NLP and Electronic Health Records},
  author = {Chun-Ting Yang and Kerry Ngan and Dae Hyun Kim and Jie Yang and Jun Liu and Kueiyu Joshua Lin},
  journal = {Innovation in Aging},
  year = {2025}
}

@article{Wu2025Clinicalpathway,
  title = {Clinical Pathway-Aware Large Language Models for Reliable and Transparent Medical Dialogue},
  author = {Jiageng Wu and Xian Wu and Yefeng Zheng and Jie Yang},
  journal = {Journal of Biomedical Informatics},
  year = {2025},
  url = {https://arxiv.org/abs/2403.06611}
}

@article{Wu2025Whychain,
  title = {Why Chain of Thought Fails in Clinical Text Understanding},
  author = {Jiageng Wu and Kevin Xie and Bowen Gu and Nils Krüger and Kueiyu Joshua Lin and Jie Yang},
  journal = {arXiv preprint},
  year = {2025},
  url = {https://arxiv.org/abs/2509.21933}
}

@article{Shao2025Generativeartificial,
  title = {Generative Artificial Intelligence for Fundus Fluorescein Angiography Interpretation and Human Expert Evaluation},
  author = {An Shao and Xiaocong Liu and Wenyue Shen and Yingyu Li and Hongkang Wu and Xiangji Pan and Zexin Yang and Yufeng Xu and Tiepei Zhu and Yao Wang and Jie Yang and Yih Chung Tham and Jian Wu and Kai Jin and Juan Ye},
  journal = {npj Digital Medicine},
  year = {2025},
  url = {https://www.nature.com/articles/s41746-025-01234-5}
}

@article{Plasek2025Comparativeranking,
  title = {Comparative Ranking of Marginal Confounding Impact of Natural Language Processing-Derived versus Structured Features in Pharmacoepidemiology},
  author = {Joseph M Plasek and Richard D Wyss and Janick G Weberpals and Jie Yang and Thomas Deramus and Theodore N Tsacogianis and Kerry Ngan and Lily G Bessette and Kueiyu Joshua Lin and Li Zhou},
  journal = {Computers in Biology and Medicine},
  year = {2025}
}

@article{Russo2025Electronichealth,
  title = {Electronic Health Record (EHR) Enhanced Signal Detection Using Tree-Based Scan Statistic Methods},
  author = {Massimiliano Russo and Sushama Kattinakere Sreedhara and Joshua Smith and Sharon E Davis and Judith C Maro and Thomas Deramus and Joyce Lii and Jie Yang and Rishi Desai and José J Hernández-Muñoz},
  journal = {American Journal of Epidemiology},
  year = {2025}
}

@article{Wu2025Cognitiveassessment,
  title = {Cognitive Assessment of Dementia Patients Using Large Language Models},
  author = {Jiageng Wu and Richard Wyss and Kueiyu Joshua Lin and Jie Yang},
  journal = {Alzheimer's & Dementia},
  year = {2025}
}

@article{Wu2025Largelanguage,
  title = {Large Language Model for Predicting Altered Mental Status in Dementia Patients Using Electronic Health Records},
  author = {Jiageng Wu and Richard Wyss and Kueiyu Joshua Lin and Jie Yang},
  journal = {Alzheimer's & Dementia},
  year = {2025}
}

@article{Yang2025Establishingvalidation,
  title = {Establishing a Validation Framework of Treatment Discontinuation in Claims Data Using Natural Language Processing and Electronic Health Records},
  author = {Chun-Ting Yang and Kerry Ngan and Dae Hyun Kim and Jie Yang and Jun Liu and Kueiyu Joshua Lin},
  journal = {Clinical Pharmacology & Therapeutics},
  year = {2025}
}

@article{Wyss2025Naturallanguage,
  title = {Natural Language Processing for Scalable Feature Engineering and Ultra-High-Dimensional Confounding Adjustment in Healthcare Database Studies},
  author = {Richard Wyss and Jie Yang and Sebastian Schneeweiss and Joseph M Plasek and Li Zhou and Thomas Deramus and Janick G Weberpals and Kerry Ngan and Kueiyu Joshua Lin},
  journal = {Journal of Biomedical Informatics},
  year = {2025}
}

@article{Gu2025Scalableinformation,
  title = {Scalable Information Extraction from Free Text Electronic Health Records Using Large Language Models},
  author = {Bowen Gu and Vivian Shao and Ziqian Liao and Valentina Carducci and Santiago Romero-Brufau and Jie Yang and Rishi Desai},
  journal = {BMC Medical Research Methodology},
  year = {2025},
  url = {https://bmcmedresmethodol.biomedcentral.com/articles/10.1186/s12874-024-02411-2}
}

@article{Lin2025Analysislongitudinal,
  title = {Analysis of Longitudinal Social Media for Monitoring Symptoms During a Pandemic},
  author = {Shixu Lin and Lucas Garay and Yining Hua and Zhijiang Guo and Wanxin Li and Minghui Li and Yujie Zhang and Xiaolin Xu and Jie Yang},
  journal = {Journal of Biomedical Informatics},
  year = {2025},
  url = {https://www.sciencedirect.com/science/article/pii/S1532046424001825}
}

@article{Wang2025Identificationanca,
  title = {Identification of an ANCA-Associated Vasculitis Cohort Using Deep Learning and Electronic Health Records},
  author = {Liqin Wang and John Novoa-Laurentiev and Claire Cook and Shruthi Srivatsan and Yining Hua and Jie Yang and Eli Miloslavsky and Hyon K Choi and Li Zhou and Zachary S Wallace},
  journal = {International Journal of Medical Informatics},
  year = {2025},
  url = {https://www.sciencedirect.com/science/article/pii/S1386505624003551}
}

@article{Li2025Characterizingpublic,
  title = {Characterizing Public Sentiments and Drug Interactions during COVID-19: A Pretrained Language Model and Network Analysis of Social Media Discourse},
  author = {Wanxin Li and Yining Hua and Peilin Zhou and Li Zhou and Xin Xu and Jie Yang},
  journal = {Journal of Medical Internet Research},
  year = {2025},
  url = {https://www.jmir.org/2025/1/e63755/}
}

@article{Gu2024Probabilisticmedical,
  title = {Probabilistic Medical Predictions of Large Language Models},
  author = {Bowen Gu and Rishi J. Desai and Kueiyu Joshua Lin and Jie Yang},
  journal = {npj Digital Medicine},
  year = {2024},
  url = {https://www.nature.com/articles/s41746-024-01366-4}
}

@article{Matheny2024Enhancingpostmarketing,
  title = {Enhancing Postmarketing Surveillance of Medical Products with Large Language Models},
  author = {Michael E Matheny and Jie Yang and Joshua C Smith and Colin G Walsh and Mohammed A Al-Garadi and Sharon E Davis and Keith Marsolo and Daniel Fabbri and Ruth Reeves and Kevin Johnson and Gerald Dal Pan and Robert Ball and Rishi Desai},
  journal = {JAMA Network Open},
  year = {2024},
  url = {https://jamanetwork.com/journals/jamanetworkopen/fullarticle/2822418}
}

@article{Wu2024Clinicaltext,
  title = {Clinical Text Datasets for Medical Artificial Intelligence and Large Language Models — A Systematic Review},
  author = {Jiageng Wu and Xiaocong Liu and Minghui Li and Wanxin Li and Zichang Su and Lucas Garay and Zhiyun Zhang and Yujie Zhang and Qingcheng Zeng and Jie Shen and Changzheng Yuan and Jie Yang},
  journal = {New England Journal of Medicine AI},
  year = {2024},
  url = {https://ai.nejm.org/doi/full/10.1056/AIra2400012}
}

@article{Hua2024Streamliningsocial,
  title = {Streamlining Social Media Information Retrieval for Public Health Research with Deep Learning},
  author = {Yining Hua and Jiageng Wu and Shixu Lin and Minghui Li and Yujie Zhang and Dinah Foer and Siwen Wang and Peilin Zhou and Jie Yang and Li Zhou},
  journal = {Journal of the American Medical Informatics Association},
  year = {2024},
  url = {https://academic.oup.com/jamia/article/31/7/1569/7667306}
}

@inproceedings{Wu2024Guidingclinical,
  title = {Guiding Clinical Reasoning with Large Language Models via Knowledge Seeds},
  author = {Jiageng Wu and Xian Wu and Jie Yang},
  booktitle = {International Joint Conference on Artificial Intelligence (IJCAI)},
  year = {2024},
  url = {https://arxiv.org/abs/2403.06609}
}

@article{Wu2024Largelanguage,
  title = {Large Language Models Leverage External Knowledge to Extend Clinical Insight Beyond Language Boundaries},
  author = {Jiageng Wu and Xian Wu and Zhaopeng Qiu and Minghui Li and Shixu Lin and Yingying Zhang and Yefeng Zheng and Changzheng Yuan and Jie Yang},
  journal = {Journal of the American Medical Informatics Association},
  year = {2024},
  url = {https://academic.oup.com/jamia/article/31/6/1394/7659846}
}

@inproceedings{Wang2024Revealingcovid,
  title = {Revealing COVID-19's Social Dynamics: Diachronic Semantic Analysis of Vaccine and Symptom Discourse on Twitter},
  author = {Zeqiang Wang and Jiageng Wu and Yuqi Wang and Wei Wang and Jie Yang and Nishanth R Sastry and Jon Johnson and Suparna De},
  booktitle = {Conference on Empirical Methods in Natural Language Processing (EMNLP), Findings},
  year = {2024}
}

@inproceedings{Wu2024Medjourneybenchmark,
  title = {MedJourney: Benchmark and Evaluation of Large Language Models over Patient Clinical Journey},
  author = {Xian Wu and Yutian Zhao and Yunyan Zhang and Jiageng Wu and Zhihong Zhu and Yingying Zhang and Yi Ouyang and Ziheng Zhang and Huimin Wang and Zhenxi Lin and Jie Yang},
  booktitle = {Conference on Neural Information Processing Systems (NeurIPS)},
  year = {2024},
  url = {https://openreview.net/forum?id=LJ4sBAFoNX}
}

@article{Zhang2024Sexualgender,
  title = {The Sexual and Gender-Diverse Face More Health Challenges During COVID-19: A Large-Scale Social Media Analysis with Natural Language Processing},
  author = {Zhiyun Zhang and Yining Hua and Peilin Zhou and Shixu Lin and Minghui Li and Yujie Zhang and Li Zhou and Yanhui Liao and Jie Yang},
  journal = {Health Data Science},
  year = {2024},
  url = {https://spj.science.org/doi/10.34133/hds.0127}
}

@article{Liu2024Uncoveringlanguage,
  title = {Uncovering Language Disparity of ChatGPT on Retinal Vascular Disease Classification: Cross-Sectional Study},
  author = {Xiaocong Liu and Jiageng Wu and An Shao and Wenyue Shen and Panpan Ye and Yao Wang and Juan Ye and Kai Jin and Jie Yang},
  journal = {Journal of Medical Internet Research},
  year = {2024},
  url = {https://www.jmir.org/2024/1/e51926}
}

@inproceedings{Zeng2023Greenplmcross,
  title = {GreenPLM: Cross-Lingual Transfer of Monolingual Pre-Trained Language Models at Almost No Cost},
  author = {Qingcheng Zeng and Lucas Garay and Peilin Zhou and Dading Chong and Yining Hua and Jiageng Wu and Yikang Pan and Han Zhou and Rob Voigt and Jie Yang},
  booktitle = {International Joint Conference on Artificial Intelligence (IJCAI)},
  year = {2023},
  url = {https://arxiv.org/abs/2211.06993}
}

@article{Tang2023Efficacywechat,
  title = {Efficacy of WeChat-Based Online Smoking Cessation Intervention ('WeChat WeQuit') in China: A Randomised Controlled Trial},
  author = {Jinsong Tang and Jie Yang and Yi Liu and Xiaocong Liu and Ling Li and Yunkai Sun and Jieyin Jin and Yehong Fang and Zitang Zhou and Yunfei Wang and Yueheng Liu and Wei Chen and Ann McNeill and Brian Kelly and Joanna E Cohen and Yanhui Liao},
  journal = {eClinicalMedicine},
  year = {2023},
  url = {https://www.thelancet.com/journals/eclinm/article/PIIS2589-5370(23)00186-4/fulltext}
}

@inproceedings{Wu2023Exploringsocial,
  title = {Exploring Social Media for Early Detection of Depression in COVID-19 Patients},
  author = {Jiageng Wu and Xian Wu and Yining Hua and Shixu Lin and Yefeng Zheng and Jie Yang},
  booktitle = {The Web Conference (WWW)},
  year = {2023},
  url = {https://arxiv.org/abs/2302.12044}
}

@article{Wu2023Trendco,
  title = {Trend and Co-occurrence Network of COVID-19 Symptoms Through Large-Scale Social Media: Infoveillance Study},
  author = {Jiageng Wu and Lumin Wang and Yining Hua and Minghui Li and Li Zhou and David W Bates and Jie Yang},
  journal = {Journal of Medical Internet Research},
  year = {2023},
  url = {https://www.jmir.org/2023/1/e45419}
}

@article{Zhu2023Betterpay,
  title = {Better Pay Attention Whilst Fuzzing},
  author = {Shunkai Zhu and Jingyi Wang and Jun Sun and Jie Yang and Xingwei Lin and Liyi Zhang and Peng Cheng},
  journal = {IEEE Transactions on Software Engineering},
  year = {2023}
}

@inproceedings{Liu2023Transformingretinal,
  title = {Transforming Retinal Vascular Disease Classification: A Comprehensive Analysis of ChatGPT's Performance and Inference Abilities},
  author = {Xiaocong Liu and Jiageng Wu and An Shao and Wenyue Shen and Panpan Ye and Yao Wang and Juan Ye and Kai Jin and Jie Yang},
  booktitle = {American Medical Informatics Association Annual Symposium (AMIA)},
  year = {2023}
}

@inproceedings{Wang2023Yatoyet,
  title = {YATO: Yet Another Deep Learning Based Text Analysis Open Toolkit},
  author = {Zeqiang Wang and Yile Wang and Jiageng Wu and Zhiyang Teng and Jie Yang},
  booktitle = {Conference on Empirical Methods in Natural Language Processing (EMNLP), Demo},
  year = {2023},
  url = {https://arxiv.org/abs/2209.13877}
}

@article{Yuan2022Geneticallypredicted,
  title = {Genetically Predicted Sex Hormone Levels and Health Outcomes: Phenome-Wide Mendelian Randomization Investigation},
  author = {Shuai Yuan and Lijuan Wang and Jing Sun and Lili Yu and Xuan Zhou and Jie Yang and Yimin Zhu and Dipender Gill and Stephen Burgess and Joshua C Denny},
  journal = {International Journal of Epidemiology},
  year = {2022},
  url = {https://academic.oup.com/ije/article/51/6/1931/6590882}
}

@inproceedings{Zhou2022Metscov,
  title = {METS-CoV: A Dataset of Medical Entity and Targeted Sentiment on COVID-19 Related Tweets},
  author = {Peilin Zhou and Zeqiang Wang and Dading Chong and Zhijiang Guo and Yining Hua and Zichang Su and Zhiyang Teng and Jiageng Wu and Jie Yang},
  booktitle = {Conference on Neural Information Processing Systems (NeurIPS)},
  year = {2022},
  url = {https://openreview.net/forum?id=GP1Ncd8nTgn}
}

@article{Li2022Trackingimpact,
  title = {Tracking the Impact of COVID-19 and Lockdown Policies on Public Mental Health Using Social Media: Infoveillance Study},
  author = {Minghui Li and Yining Hua and Yanhui Liao and Li Zhou and Xue Li and Ling Wang and Jie Yang},
  journal = {Journal of Medical Internet Research},
  year = {2022},
  url = {https://www.jmir.org/2022/10/e39676/}
}

@inproceedings{Zeng2022Lowresource,
  title = {Low-resource Accent Classification in Geographically-Proximate Settings: A Forensic and Sociophonetics Perspective},
  author = {Qingcheng Zeng and Dading Chong and Peilin Zhou and Jie Yang},
  booktitle = {Annual Conference of the International Speech Communication Association (INTERSPEECH)},
  year = {2022},
  url = {https://arxiv.org/abs/2206.12759}
}

@article{Diamond2022Naturallanguage,
  title = {Natural Language Processing to Identify Abnormal Breast, Lung, and Cervical Cancer Screening Test Results from Unstructured Reports to Support Timely Follow-up},
  author = {Courtney J Diamond and John Laurentiev and Jie Yang and Amy Wint and Kimberly A Harris and Tin H Dang and Amrita Mecker and Emily B Carpenter and Anna N Tosteson and Adam Wright},
  journal = {Studies in Health Technology and Informatics},
  year = {2022},
  url = {https://ebooks.iospress.nl/doi/10.3233/SHTI220112}
}

@article{Hua2022Twitterdata,
  title = {Using Twitter Data to Understand Public Perceptions of Approved versus Off-label Use for COVID-19-related Medications},
  author = {Yining Hua and Hang Jiang and Shixu Lin and Jie Yang and Joseph M Plasek and David W Bates and Li Zhou},
  journal = {Journal of the American Medical Informatics Association},
  year = {2022},
  url = {https://academic.oup.com/jamia/article/29/10/1668/6625661}
}

@article{Wang2021Developmentvalidation,
  title = {Development and Validation of a Deep Learning Model for Earlier Detection of Cognitive Decline from Clinical Notes in Electronic Health Records},
  author = {Liqin Wang and John Laurentiev and Jie Yang and Ying-Chih Lo and Rebecca E. Amariglio and Deborah Blacker and Reisa A. Sperling and Gad A. Marshall and Li Zhou},
  journal = {JAMA Network Open},
  year = {2021},
  url = {https://jamanetwork.com/journals/jamanetworkopen/fullarticle/2786292}
}

@article{Yang2021Assessingprognostic,
  title = {Assessing the Prognostic Significance of Tumor-Infiltrating Lymphocytes in Patients With Melanoma Using Pathologic Features Identified by Natural Language Processing},
  author = {Jie Yang and John Lian and Yen Po Chin and Liqin Wang and Anna Lian and George F. Murphy and Li Zhou},
  journal = {JAMA Network Open},
  year = {2021},
  url = {https://jamanetwork.com/journals/jamanetworkopen/fullarticle/2784429}
}

@article{Wan2021Sentimentcorrelation,
  title = {Sentiment Correlation in Financial News Networks and Associated Market Movements},
  author = {Xingchen Wan and Jie Yang and Slavi Marinov and Jan-Peter Calliess and Stefan Zohren and Xiaowen Dong},
  journal = {Scientific Reports},
  year = {2021},
  url = {https://www.nature.com/articles/s41598-021-82338-3}
}

@article{Haas2021Multilevelfollow,
  title = {Multilevel Follow-up of Cancer Screening (mFOCUS): Protocol for a Multilevel Intervention to Improve the Follow-up of Abnormal Cancer Screening Test Results},
  author = {Jennifer S Haas and Steven J Atlas and Adam Wright and E John Orav and David G Aman and Erica S Breslau and Timothy E Burdick and Emily Carpenter and Frank Chang and Tin Dang and Jie Yang and Li Zhou and Anna Tosteson},
  journal = {Contemporary Clinical Trials},
  year = {2021},
  url = {https://www.sciencedirect.com/science/article/pii/S155171442100269X}
}

@article{Yang2020Developmentvalidation,
  title = {Development and Validation of a Deep Learning Model for Detection of Allergic Reactions Using Safety Event Reports Across Hospitals},
  author = {Jie Yang and Liqin Wang and Neelam A. Phadke and Paige G. Wickner and Christian M. Mancini and Kimberly G. Blumenthal and Li Zhou},
  journal = {JAMA Network Open},
  year = {2020},
  url = {https://jamanetwork.com/journals/jamanetworkopen/fullarticle/2772992}
}

@inproceedings{Yang2020Deeplearning,
  title = {Deep Learning to Detect Allergy Events from Hospital Safety Reports},
  author = {Jie Yang and Liqin Wang and Neelam A Phadke and Paige G Wickner and Christian M Mancini and Kimberly G Blumenthal and Li Zhou},
  booktitle = {American Medical Informatics Association Annual Symposium (AMIA)},
  year = {2020}
}

@inproceedings{Diamond2020Implementingit,
  title = {Implementing an IT-Based Intervention to Improve Follow-up Rates of Abnormal Cancer Screening Results: the mFOCUS Trial},
  author = {Courtney Diamond and Steven Atlas and Tin Dang and Jie Yang and Li Zhou and Sanja Percac-Lima and Amy Wint and Kimberly Harris and John Orav and Erica Breslau and Shoshana Hort and Anna Tosteson and Jennifer Haas and Adam Wright},
  booktitle = {American Medical Informatics Association Annual Symposium (AMIA)},
  year = {2020}
}

@article{Phadke2020Allergicreactions,
  title = {Allergic Reactions in Two Academic Medical Centers},
  author = {Neelam A. Phadke and Li Zhou and Christian M. Mancini and Jie Yang and Liqin Wang and Paige Wickner and Xiaoqing Fu and Kimberly G. Blumenthal},
  journal = {Journal of General Internal Medicine},
  year = {2020},
  url = {https://link.springer.com/article/10.1007/s11606-020-06190-6}
}

@article{Yang2020Disparitiesoutpatient,
  title = {Disparities in Outpatient Visits for Mental Health and/or Substance Use Disorders During the COVID-19 Surge and Partial Reopening in Massachusetts},
  author = {Jie Yang and Mary B. Landrum and Li Zhou and Alisa B Busch},
  journal = {General Hospital Psychiatry},
  year = {2020},
  url = {https://www.sciencedirect.com/science/article/pii/S0163834320301407}
}

@article{Zhang2020Latticelstm,
  title = {Lattice LSTM for Chinese Sentence Representation},
  author = {Yue Zhang and Yile Wang and Jie Yang},
  journal = {IEEE/ACM Transactions on Audio, Speech, and Language Processing},
  year = {2020},
  url = {https://ieeexplore.ieee.org/document/9082853}
}

@inproceedings{Yang2019Subwordencoding,
  title = {Subword Encoding in Lattice LSTM for Chinese Word Segmentation},
  author = {Jie Yang and Yue Zhang and Shuailong Liang},
  booktitle = {Annual Conference of the North American Chapter of the Association for Computational Linguistics (NAACL)},
  year = {2019},
  url = {https://aclanthology.org/N19-1278/}
}

@article{Korach2019Miningclinical,
  title = {Mining Clinical Phrases from Nursing Notes to Discover Risk Factors of Patient Deterioration},
  author = {Zfania T. Korach and Jie Yang and Sarah Collins Rossetti and Kenrick D. Cato and Min-Jeoung Kang and Christopher Knaplund and Kumiko O. Schnock and Jose P. Garcia and Haomiao Jia and Jessica M. Schwartz and Li Zhou},
  journal = {International Journal of Medical Informatics},
  year = {2019},
  url = {https://www.sciencedirect.com/science/article/pii/S1386505619309682}
}

@article{Wang2019Genesiscreole,
  title = {From Genesis to Creole Language: Transfer Learning for Singlish Universal Dependencies Parsing and POS Tagging},
  author = {Hongming Wang and Jie Yang and Yue Zhang},
  journal = {ACM Transactions on Asian and Low-Resource Language Information Processing},
  year = {2019},
  url = {https://dl.acm.org/doi/10.1145/3321128}
}

@inproceedings{Yang2018Designchallenges,
  title = {Design Challenges and Misconceptions in Neural Sequence Labeling},
  author = {Jie Yang and Shuailong Liang and Yue Zhang},
  booktitle = {International Conference on Computational Linguistics (COLING)},
  year = {2018},
  url = {https://aclanthology.org/C18-1327/}
}

@inproceedings{Yang2018Ncrfopen,
  title = {NCRF++: An Open-source Neural Sequence Labeling Toolkit},
  author = {Jie Yang and Yue Zhang},
  booktitle = {Annual Meeting of the Association for Computational Linguistics (ACL), Demo},
  year = {2018},
  url = {https://aclanthology.org/P18-4013/}
}

@inproceedings{Zhang2018Chinesener,
  title = {Chinese NER Using Lattice LSTM},
  author = {Yue Zhang and Jie Yang},
  booktitle = {Annual Meeting of the Association for Computational Linguistics (ACL)},
  year = {2018},
  url = {https://aclanthology.org/P18-1144/}
}

@inproceedings{Yang2018Yeddalightweight,
  title = {YEDDA: A Lightweight Collaborative Text Span Annotation Tool},
  author = {Jie Yang and Yue Zhang and Linwei Li and Xingxuan Li},
  booktitle = {Annual Meeting of the Association for Computational Linguistics (ACL), Demo},
  year = {2018},
  url = {https://aclanthology.org/P18-4006/}
}

@inproceedings{Yang2017Neuralword,
  title = {Neural Word Segmentation with Rich Pretraining},
  author = {Jie Yang and Yue Zhang and Fei Dong},
  booktitle = {Annual Meeting of the Association for Computational Linguistics (ACL)},
  year = {2017},
  url = {https://aclanthology.org/P17-1078/}
}

@inproceedings{Wang2017Universaldependencies,
  title = {Universal Dependencies Parsing for Colloquial Singaporean English},
  author = {Hongmin Wang and Yue Zhang and Guang Yow Leonard Chan and Jie Yang and Hai Leong Chieu},
  booktitle = {Annual Meeting of the Association for Computational Linguistics (ACL)},
  year = {2017},
  url = {https://aclanthology.org/P17-1159/}
}

@inproceedings{Dong2017Attentionbased,
  title = {Attention-based Recurrent Convolutional Neural Network for Automatic Essay Scoring},
  author = {Fei Dong and Yue Zhang and Jie Yang},
  booktitle = {Conference on Computational Natural Language Learning (CoNLL)},
  year = {2017},
  url = {https://aclanthology.org/K17-1017/}
}

@inproceedings{Yang2017Neuralreranking,
  title = {Neural Reranking for Named Entity Recognition},
  author = {Jie Yang and Yue Zhang and Fei Dong},
  booktitle = {Recent Advances in Natural Language Processing (RANLP)},
  year = {2017},
  url = {https://aclanthology.org/R17-1101/}
}

@inproceedings{Yang2016Combiningdiscrete,
  title = {Combining Discrete and Neural Features for Sequence Labeling},
  author = {Jie Yang and Zhiyang Teng and Meishan Zhang and Yue Zhang},
  booktitle = {International Conference on Intelligent Text Processing and Computational Linguistics (CICLing)},
  year = {2016},
  url = {https://arxiv.org/abs/1708.07279}
}

@inproceedings{Zhang2016Libn3llightweight,
  title = {LibN3L: A Lightweight Package for Neural NLP},
  author = {Meishan Zhang and Jie Yang and Zhiyang Teng and Yue Zhang},
  booktitle = {Language Resources and Evaluation Conference (LREC)},
  year = {2016},
  url = {https://aclanthology.org/L16-1034/}
}

@article{Jia2015Effectsdefects,
  title = {Effects of Defects and Thermal Treatment on the Properties of Graphene},
  author = {Kunpeng Jia and Yajuan Su and Yang Chen and Jun Luo and Jie Yang and Peng Lv and Zihan Zhang and Huilong Zhu and Chao Zhao and Tianchun Ye},
  journal = {Vacuum},
  year = {2015},
  url = {https://www.sciencedirect.com/science/article/pii/S0042207X15000949}
}

@article{Yang2014Hysteresisanalysis,
  title = {Hysteresis Analysis of Graphene Transistor Under Repeated Test and Gate Voltage Stress},
  author = {Jie Yang and Kunpeng Jia and Yajuan Su and Yang Chen and Chao Zhao},
  journal = {Journal of Semiconductors},
  year = {2014},
  url = {https://iopscience.iop.org/article/10.1088/1674-4926/35/9/094003}
}

@article{Jia2013Stabilityanalysis,
  title = {Stability Analysis of a Back-gate Graphene Transistor in Air Environment},
  author = {Kunpeng Jia and Jie Yang and Yajuan Su and Pengfei Nie and Jian Zhong and Qingqing Liang and Huilong Zhu},
  journal = {Journal of Semiconductors},
  year = {2013},
  url = {https://iopscience.iop.org/article/10.1088/1674-4926/34/8/084004}
}