{
  "schema_version": "1.0",
  "name": "YLab Publications",
  "canonical_page": "https://ylab.top/publication/",
  "all_bibtex_url": "https://ylab.top/bib/publications.bib",
  "number_of_publications": 77,
  "publications": [
    {
      "title": "BRIDGE: Benchmarking Large Language Models for Understanding Real-World Clinical Practice Texts",
      "authors": [
        "Jiageng Wu",
        "Bowen Gu",
        "Ren Zhou",
        "Kevin Xie",
        "Doug Snyder",
        "Yixing Jiang",
        "Valentina Carducci",
        "Richard Wyss",
        "Rishi J Desai",
        "Emily Alsentzer",
        "Leo Anthony Celi",
        "Adam Rodman",
        "Sebastian Schneeweiss",
        "Jonathan H Chen",
        "Santiago Romero-Brufau",
        "Kueiyu Joshua Lin",
        "Jie Yang"
      ],
      "year": 2026,
      "venue": "Nature Biomedical Engineering",
      "url": "https://www.nature.com/articles/s41551-026-01719-2",
      "citation_page_url": "https://ylab.top/citation/bridge-benchmarking-large-language-models-for-understanding-real-world-clinical-practice-texts/",
      "bibtex_url": "https://ylab.top/bib/bridge-benchmarking-large-language-models-for-understanding-real-world-clinical-practice-texts.bib",
      "citation_key": "Wu2026Bridgebenchmarking",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Large Language Models Generate Stigmatizing Language During Reasoning Over Real-World Clinical Data",
      "authors": [
        "Yutong Yang",
        "Bowen Gu",
        "David B Hathaway",
        "Richard Wyss",
        "Laura Marengo",
        "Jason B Gibbons",
        "Stanley Lyndon",
        "Jiageng Wu",
        "Qingyu Chen",
        "Nan Liu",
        "Philip S Wang",
        "Leo Anthony Celi",
        "David W Bates",
        "Kueiyu Joshua Lin",
        "Li Zhou",
        "Jie Yang"
      ],
      "year": 2026,
      "venue": "medRxiv preprint",
      "url": "https://www.medrxiv.org/content/10.64898/2026.08.12.26360210v2",
      "citation_page_url": "https://ylab.top/citation/large-language-models-generate-stigmatizing-language-during-reasoning-over-real-world-clinical-data/",
      "bibtex_url": "https://ylab.top/bib/large-language-models-generate-stigmatizing-language-during-reasoning-over-real-world-clinical-data.bib",
      "citation_key": "Yang2026StigmatizingLanguage",
      "bibtex_type": "article",
      "doi": "10.64898/2026.08.12.26360210"
    },
    {
      "title": "An Expedited Chart Review Process for Large Database Studies Using Natural Language Processing and Multiwave Adaptive Sampling",
      "authors": [
        "Shirley V Wang",
        "Georg Hahn",
        "Sreedhara Sushama Kattinakere",
        "Mufaddal Mahesri",
        "Haritha S Pillai",
        "Rajendra Aldis",
        "Joyce Lii",
        "Sarah K Dutcher",
        "Rhoda Eniafe",
        "Jamal T Jones",
        "Keewan Kim",
        "Jiwei He",
        "Hana Lee",
        "Sengwee Toh",
        "Rishi J Desai",
        "Jie Yang"
      ],
      "year": 2026,
      "venue": "Epidemiology",
      "url": "https://pubmed.ncbi.nlm.nih.gov/41944789/",
      "citation_page_url": "https://ylab.top/citation/an-expedited-chart-review-process-for-large-database-studies-using-natural-language-processing-and-multiwave-adaptive-sampling/",
      "bibtex_url": "https://ylab.top/bib/an-expedited-chart-review-process-for-large-database-studies-using-natural-language-processing-and-multiwave-adaptive-sampling.bib",
      "citation_key": "Wang2026Expeditedchart",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "DT-Transformer: A Foundation Model for Disease Trajectory Prediction on a Real-World Health System",
      "authors": [
        "Yunying Zhu",
        "Andrew R Weckstein",
        "Kueiyu Joshua Lin",
        "Jie Yang"
      ],
      "year": 2026,
      "venue": "arXiv preprint",
      "url": "https://arxiv.org/abs/2605.14227",
      "citation_page_url": "https://ylab.top/citation/dt-transformer-a-foundation-model-for-disease-trajectory-prediction-on-a-real-world-health-system/",
      "bibtex_url": "https://ylab.top/bib/dt-transformer-a-foundation-model-for-disease-trajectory-prediction-on-a-real-world-health-system.bib",
      "citation_key": "Zhu2026Dttransformer",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Trustworthy Classification for Complex Social Surveys: A Memory-Enhanced Hierarchical Framework with Calibrated Uncertainty",
      "authors": [
        "Zeqiang Wang",
        "Rebecca Oldroyd",
        "Yuqi Wang",
        "Jiageng Wu",
        "Jie Yang",
        "Wei Wang",
        "Nishanth R Sastry",
        "Jon Johnson",
        "Suparna De"
      ],
      "year": 2026,
      "venue": "Proceedings of the AAAI Conference on Artificial Intelligence",
      "url": "https://ojs.aaai.org/index.php/AAAI/article/view/41291",
      "citation_page_url": "https://ylab.top/citation/trustworthy-classification-for-complex-social-surveys-a-memory-enhanced-hierarchical-framework-with-calibrated-uncertainty/",
      "bibtex_url": "https://ylab.top/bib/trustworthy-classification-for-complex-social-surveys-a-memory-enhanced-hierarchical-framework-with-calibrated-uncertainty.bib",
      "citation_key": "Wang2026TrustworthyClassification",
      "bibtex_type": "inproceedings",
      "doi": "10.1609/aaai.v40i46.41291"
    },
    {
      "title": "Linguistic Effects of Ambient AI on Clinical Documentation: A Matched Pre-Post Study",
      "authors": [
        "Yiming Li",
        "Huiyuan Zhou",
        "Suzanne Blackley",
        "Joseph M Plasek",
        "Zhuoyang Lyu",
        "Wei Zhang",
        "Jacqueline You",
        "Amanda Centi",
        "Rebecca Mishuris",
        "Jie Yang",
        "Li Zhou"
      ],
      "year": 2026,
      "venue": "medRxiv preprint",
      "url": "https://www.medrxiv.org/content/10.64898/2026.02.16.26346370v1",
      "citation_page_url": "https://ylab.top/citation/linguistic-effects-of-ambient-ai-on-clinical-documentation-a-matched-pre-post-study/",
      "bibtex_url": "https://ylab.top/bib/linguistic-effects-of-ambient-ai-on-clinical-documentation-a-matched-pre-post-study.bib",
      "citation_key": "Li2026Linguisticeffects",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Transcranial Magnetic Stimulation Retreatment for Recurrent Depression: A Large Real-World Multisite Cohort Study",
      "authors": [
        "Stanley Lyndon",
        "Jason B Gibbons",
        "Loreen Straub",
        "Meekang Sung",
        "Jacob C Jameson",
        "David B Hathaway",
        "Denise H Mulcahy",
        "Cason Elliott",
        "Rachel Wood",
        "Matthew Ruble",
        "Alejandro G Szmulewicz",
        "Jie Yang",
        "Rajendra Aldis",
        "Richard Wyss",
        "Philip S Wang",
        "Shan H Siddiqi"
      ],
      "year": 2026,
      "venue": "Acta Psychiatrica Scandinavica",
      "url": null,
      "citation_page_url": "https://ylab.top/citation/transcranial-magnetic-stimulation-retreatment-for-recurrent-depression-a-large-real-world-multisite-cohort-study/",
      "bibtex_url": "https://ylab.top/bib/transcranial-magnetic-stimulation-retreatment-for-recurrent-depression-a-large-real-world-multisite-cohort-study.bib",
      "citation_key": "Lyndon2026Transcranialmagnetic",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Predicting Deprescribing of High-Risk Medications Using Provider EHR Use and Patient Characteristics",
      "authors": [
        "Bowen Gu",
        "Katharina Tabea Jungo",
        "Julie Lauffenburger",
        "Niteesh Choudhry",
        "Thomas Isaac",
        "John Zambrano",
        "Jie Yang"
      ],
      "year": 2026,
      "venue": "medRxiv preprint",
      "url": "https://www.medrxiv.org/content/10.64898/2026.07.25.26358746v1",
      "citation_page_url": "https://ylab.top/citation/predicting-deprescribing-of-high-risk-medications-using-provider-ehr-use-and-patient-characteristics/",
      "bibtex_url": "https://ylab.top/bib/predicting-deprescribing-of-high-risk-medications-using-provider-ehr-use-and-patient-characteristics.bib",
      "citation_key": "Gu2026Predictingdeprescribing",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Using Natural Language Processing of Clinical Notes to Supplement Structured Electronic Health Record Data for Phenotyping Smoking and Obesity in a Healthcare System",
      "authors": [
        "Jie Yang",
        "Bowen Gu",
        "Haritha Pillai",
        "Joyce Lii",
        "David Cronkite",
        "Keith A Marsolo",
        "Rishi J Desai"
      ],
      "year": 2026,
      "venue": "Pharmacoepidemiology and Drug Safety",
      "url": "https://onlinelibrary.wiley.com/doi/full/10.1002/pds.70415",
      "citation_page_url": "https://ylab.top/citation/using-natural-language-processing-of-clinical-notes-to-supplement-structured-electronic-health-record-data-for-phenotyping-smoking-and-obesity-in-a-healthcare-system/",
      "bibtex_url": "https://ylab.top/bib/using-natural-language-processing-of-clinical-notes-to-supplement-structured-electronic-health-record-data-for-phenotyping-smoking-and-obesity-in-a-healthcare-system.bib",
      "citation_key": "Yang2026Naturallanguage",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Scalable Medication Extraction and Discontinuation Identification from Electronic Health Records Using Large Language Models",
      "authors": [
        "Chong Shao",
        "Douglas Snyder",
        "Chiran Li",
        "Bowen Gu",
        "Kerry Ngan",
        "Chun-Ting Yang",
        "Jiageng Wu",
        "Richard Wyss",
        "Kueiyu Joshua Lin",
        "Jie Yang"
      ],
      "year": 2026,
      "venue": "Journal of Clinical Epidemiology",
      "url": "https://pubmed.ncbi.nlm.nih.gov/41232578/",
      "citation_page_url": "https://ylab.top/citation/scalable-medication-extraction-and-discontinuation-identification-from-electronic-health-records-using-large-language-models/",
      "bibtex_url": "https://ylab.top/bib/scalable-medication-extraction-and-discontinuation-identification-from-electronic-health-records-using-large-language-models.bib",
      "citation_key": "Shao2026Scalablemedication",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Efficacy of Cognitive Behavioral Therapy-Based Smartphone App for Smoking Cessation in China: A Randomized Controlled Trial",
      "authors": [
        "Jinsong Tang",
        "Xiaocong Liu",
        "Shanshan Chen",
        "Yunkai Sun",
        "Minzhe Zhu",
        "Zitang Zhou",
        "Yueheng Liu",
        "Jie Yang",
        "Wei Chen",
        "Yanhui Liao"
      ],
      "year": 2026,
      "venue": "Addiction",
      "url": "https://onlinelibrary.wiley.com/doi/10.1111/add.70239",
      "citation_page_url": "https://ylab.top/citation/efficacy-of-cognitive-behavioral-therapy-based-smartphone-app-for-smoking-cessation-in-china-a-randomized-controlled-trial/",
      "bibtex_url": "https://ylab.top/bib/efficacy-of-cognitive-behavioral-therapy-based-smartphone-app-for-smoking-cessation-in-china-a-randomized-controlled-trial.bib",
      "citation_key": "Tang2026Efficacycognitive",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "MedKGent: A Large Language Model Agent Framework for Constructing Temporally Evolving Medical Knowledge Graph",
      "authors": [
        "Duzhen Zhang",
        "Zixiao Wang",
        "Zhong-Zhi Li",
        "Yahan Yu",
        "Shuncheng Jia",
        "Jiahua Dong",
        "Haotian Xu",
        "Xing Wu",
        "Yingying Zhang",
        "Tielin Zhang",
        "Jie Yang",
        "Xiuying Chen",
        "Le Song"
      ],
      "year": 2026,
      "venue": "npj Digital Medicine",
      "url": "https://arxiv.org/abs/2508.12393",
      "citation_page_url": "https://ylab.top/citation/medkgent-a-large-language-model-agent-framework-for-constructing-temporally-evolving-medical-knowledge-graph/",
      "bibtex_url": "https://ylab.top/bib/medkgent-a-large-language-model-agent-framework-for-constructing-temporally-evolving-medical-knowledge-graph.bib",
      "citation_key": "Zhang2026Medkgentlarge",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "FinTruthQA: A Benchmark for AI-Driven Financial Disclosure Quality Assessment in Investor-Firm Interactions",
      "authors": [
        "Peilin Zhou",
        "Ziyue Xu",
        "Xinyu Shi",
        "Jiageng Wu",
        "Yikang Jiang",
        "Dading Chong",
        "Wang Dong",
        "Jun Chen",
        "Bin Ke",
        "Jie Yang"
      ],
      "year": 2026,
      "venue": "Proceedings of the AAAI Symposium Series",
      "url": "https://ojs.aaai.org/index.php/AAAI-SS/article/view/42926",
      "citation_page_url": "https://ylab.top/citation/fintruthqa-a-benchmark-for-ai-driven-financial-disclosure-quality-assessment-in-investor-firm-interactions/",
      "bibtex_url": "https://ylab.top/bib/fintruthqa-a-benchmark-for-ai-driven-financial-disclosure-quality-assessment-in-investor-firm-interactions.bib",
      "citation_key": "Zhou2026FinTruthQA",
      "bibtex_type": "inproceedings",
      "doi": null
    },
    {
      "title": "The Impact of Low EHR-Continuity on Effect Estimates: Evidence from Two EHR-Medicare Linked Databases",
      "authors": [
        "Yinzhu Jin",
        "Angela Y Tong",
        "Richard Wyss",
        "Jie Yang",
        "Kueiyu Joshua Lin"
      ],
      "year": 2025,
      "venue": "Clinical Epidemiology",
      "url": null,
      "citation_page_url": "https://ylab.top/citation/the-impact-of-low-ehr-continuity-on-effect-estimates-evidence-from-two-ehr-medicare-linked-databases/",
      "bibtex_url": "https://ylab.top/bib/the-impact-of-low-ehr-continuity-on-effect-estimates-evidence-from-two-ehr-medicare-linked-databases.bib",
      "citation_key": "Jin2025Impactlow",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Validation of Treatment Discontinuation in Claims Data Using NLP and Electronic Health Records",
      "authors": [
        "Chun-Ting Yang",
        "Kerry Ngan",
        "Dae Hyun Kim",
        "Jie Yang",
        "Jun Liu",
        "Kueiyu Joshua Lin"
      ],
      "year": 2025,
      "venue": "Innovation in Aging",
      "url": null,
      "citation_page_url": "https://ylab.top/citation/validation-of-treatment-discontinuation-in-claims-data-using-nlp-and-electronic-health-records/",
      "bibtex_url": "https://ylab.top/bib/validation-of-treatment-discontinuation-in-claims-data-using-nlp-and-electronic-health-records.bib",
      "citation_key": "Yang2025Validationtreatment",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Clinical Pathway-Aware Large Language Models for Reliable and Transparent Medical Dialogue",
      "authors": [
        "Jiageng Wu",
        "Xian Wu",
        "Yefeng Zheng",
        "Jie Yang"
      ],
      "year": 2025,
      "venue": "Journal of Biomedical Informatics",
      "url": "https://arxiv.org/abs/2403.06611",
      "citation_page_url": "https://ylab.top/citation/clinical-pathway-aware-large-language-models-for-reliable-and-transparent-medical-dialogue/",
      "bibtex_url": "https://ylab.top/bib/clinical-pathway-aware-large-language-models-for-reliable-and-transparent-medical-dialogue.bib",
      "citation_key": "Wu2025Clinicalpathway",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Why Chain of Thought Fails in Clinical Text Understanding",
      "authors": [
        "Jiageng Wu",
        "Kevin Xie",
        "Bowen Gu",
        "Nils Krüger",
        "Kueiyu Joshua Lin",
        "Jie Yang"
      ],
      "year": 2025,
      "venue": "arXiv preprint",
      "url": "https://arxiv.org/abs/2509.21933",
      "citation_page_url": "https://ylab.top/citation/why-chain-of-thought-fails-in-clinical-text-understanding/",
      "bibtex_url": "https://ylab.top/bib/why-chain-of-thought-fails-in-clinical-text-understanding.bib",
      "citation_key": "Wu2025Whychain",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Generative Artificial Intelligence for Fundus Fluorescein Angiography Interpretation and Human Expert Evaluation",
      "authors": [
        "An Shao",
        "Xiaocong Liu",
        "Wenyue Shen",
        "Yingyu Li",
        "Hongkang Wu",
        "Xiangji Pan",
        "Zexin Yang",
        "Yufeng Xu",
        "Tiepei Zhu",
        "Yao Wang",
        "Jie Yang",
        "Yih Chung Tham",
        "Jian Wu",
        "Kai Jin",
        "Juan Ye"
      ],
      "year": 2025,
      "venue": "npj Digital Medicine",
      "url": "https://www.nature.com/articles/s41746-025-01234-5",
      "citation_page_url": "https://ylab.top/citation/generative-artificial-intelligence-for-fundus-fluorescein-angiography-interpretation-and-human-expert-evaluation/",
      "bibtex_url": "https://ylab.top/bib/generative-artificial-intelligence-for-fundus-fluorescein-angiography-interpretation-and-human-expert-evaluation.bib",
      "citation_key": "Shao2025Generativeartificial",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Comparative Ranking of Marginal Confounding Impact of Natural Language Processing-Derived versus Structured Features in Pharmacoepidemiology",
      "authors": [
        "Joseph M Plasek",
        "Richard D Wyss",
        "Janick G Weberpals",
        "Jie Yang",
        "Thomas Deramus",
        "Theodore N Tsacogianis",
        "Kerry Ngan",
        "Lily G Bessette",
        "Kueiyu Joshua Lin",
        "Li Zhou"
      ],
      "year": 2025,
      "venue": "Computers in Biology and Medicine",
      "url": null,
      "citation_page_url": "https://ylab.top/citation/comparative-ranking-of-marginal-confounding-impact-of-natural-language-processing-derived-versus-structured-features-in-pharmacoepidemiology/",
      "bibtex_url": "https://ylab.top/bib/comparative-ranking-of-marginal-confounding-impact-of-natural-language-processing-derived-versus-structured-features-in-pharmacoepidemiology.bib",
      "citation_key": "Plasek2025Comparativeranking",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Electronic Health Record (EHR) Enhanced Signal Detection Using Tree-Based Scan Statistic Methods",
      "authors": [
        "Massimiliano Russo",
        "Sushama Kattinakere Sreedhara",
        "Joshua Smith",
        "Sharon E Davis",
        "Judith C Maro",
        "Thomas Deramus",
        "Joyce Lii",
        "Jie Yang",
        "Rishi Desai",
        "José J Hernández-Muñoz"
      ],
      "year": 2025,
      "venue": "American Journal of Epidemiology",
      "url": null,
      "citation_page_url": "https://ylab.top/citation/electronic-health-record-ehr-enhanced-signal-detection-using-tree-based-scan-statistic-methods/",
      "bibtex_url": "https://ylab.top/bib/electronic-health-record-ehr-enhanced-signal-detection-using-tree-based-scan-statistic-methods.bib",
      "citation_key": "Russo2025Electronichealth",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Cognitive Assessment of Dementia Patients Using Large Language Models",
      "authors": [
        "Jiageng Wu",
        "Richard Wyss",
        "Kueiyu Joshua Lin",
        "Jie Yang"
      ],
      "year": 2025,
      "venue": "Alzheimer's & Dementia",
      "url": null,
      "citation_page_url": "https://ylab.top/citation/cognitive-assessment-of-dementia-patients-using-large-language-models/",
      "bibtex_url": "https://ylab.top/bib/cognitive-assessment-of-dementia-patients-using-large-language-models.bib",
      "citation_key": "Wu2025Cognitiveassessment",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Large Language Model for Predicting Altered Mental Status in Dementia Patients Using Electronic Health Records",
      "authors": [
        "Jiageng Wu",
        "Richard Wyss",
        "Kueiyu Joshua Lin",
        "Jie Yang"
      ],
      "year": 2025,
      "venue": "Alzheimer's & Dementia",
      "url": null,
      "citation_page_url": "https://ylab.top/citation/large-language-model-for-predicting-altered-mental-status-in-dementia-patients-using-electronic-health-records/",
      "bibtex_url": "https://ylab.top/bib/large-language-model-for-predicting-altered-mental-status-in-dementia-patients-using-electronic-health-records.bib",
      "citation_key": "Wu2025Largelanguage",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Establishing a Validation Framework of Treatment Discontinuation in Claims Data Using Natural Language Processing and Electronic Health Records",
      "authors": [
        "Chun-Ting Yang",
        "Kerry Ngan",
        "Dae Hyun Kim",
        "Jie Yang",
        "Jun Liu",
        "Kueiyu Joshua Lin"
      ],
      "year": 2025,
      "venue": "Clinical Pharmacology & Therapeutics",
      "url": null,
      "citation_page_url": "https://ylab.top/citation/establishing-a-validation-framework-of-treatment-discontinuation-in-claims-data-using-natural-language-processing-and-electronic-health-records/",
      "bibtex_url": "https://ylab.top/bib/establishing-a-validation-framework-of-treatment-discontinuation-in-claims-data-using-natural-language-processing-and-electronic-health-records.bib",
      "citation_key": "Yang2025Establishingvalidation",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Natural Language Processing for Scalable Feature Engineering and Ultra-High-Dimensional Confounding Adjustment in Healthcare Database Studies",
      "authors": [
        "Richard Wyss",
        "Jie Yang",
        "Sebastian Schneeweiss",
        "Joseph M Plasek",
        "Li Zhou",
        "Thomas Deramus",
        "Janick G Weberpals",
        "Kerry Ngan",
        "Kueiyu Joshua Lin"
      ],
      "year": 2025,
      "venue": "Journal of Biomedical Informatics",
      "url": null,
      "citation_page_url": "https://ylab.top/citation/natural-language-processing-for-scalable-feature-engineering-and-ultra-high-dimensional-confounding-adjustment-in-healthcare-database-studies/",
      "bibtex_url": "https://ylab.top/bib/natural-language-processing-for-scalable-feature-engineering-and-ultra-high-dimensional-confounding-adjustment-in-healthcare-database-studies.bib",
      "citation_key": "Wyss2025Naturallanguage",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Scalable Information Extraction from Free Text Electronic Health Records Using Large Language Models",
      "authors": [
        "Bowen Gu",
        "Vivian Shao",
        "Ziqian Liao",
        "Valentina Carducci",
        "Santiago Romero-Brufau",
        "Jie Yang",
        "Rishi Desai"
      ],
      "year": 2025,
      "venue": "BMC Medical Research Methodology",
      "url": "https://bmcmedresmethodol.biomedcentral.com/articles/10.1186/s12874-024-02411-2",
      "citation_page_url": "https://ylab.top/citation/scalable-information-extraction-from-free-text-electronic-health-records-using-large-language-models/",
      "bibtex_url": "https://ylab.top/bib/scalable-information-extraction-from-free-text-electronic-health-records-using-large-language-models.bib",
      "citation_key": "Gu2025Scalableinformation",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Analysis of Longitudinal Social Media for Monitoring Symptoms During a Pandemic",
      "authors": [
        "Shixu Lin",
        "Lucas Garay",
        "Yining Hua",
        "Zhijiang Guo",
        "Wanxin Li",
        "Minghui Li",
        "Yujie Zhang",
        "Xiaolin Xu",
        "Jie Yang"
      ],
      "year": 2025,
      "venue": "Journal of Biomedical Informatics",
      "url": "https://www.sciencedirect.com/science/article/pii/S1532046424001825",
      "citation_page_url": "https://ylab.top/citation/analysis-of-longitudinal-social-media-for-monitoring-symptoms-during-a-pandemic/",
      "bibtex_url": "https://ylab.top/bib/analysis-of-longitudinal-social-media-for-monitoring-symptoms-during-a-pandemic.bib",
      "citation_key": "Lin2025Analysislongitudinal",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Identification of an ANCA-Associated Vasculitis Cohort Using Deep Learning and Electronic Health Records",
      "authors": [
        "Liqin Wang",
        "John Novoa-Laurentiev",
        "Claire Cook",
        "Shruthi Srivatsan",
        "Yining Hua",
        "Jie Yang",
        "Eli Miloslavsky",
        "Hyon K Choi",
        "Li Zhou",
        "Zachary S Wallace"
      ],
      "year": 2025,
      "venue": "International Journal of Medical Informatics",
      "url": "https://www.sciencedirect.com/science/article/pii/S1386505624003551",
      "citation_page_url": "https://ylab.top/citation/identification-of-an-anca-associated-vasculitis-cohort-using-deep-learning-and-electronic-health-records/",
      "bibtex_url": "https://ylab.top/bib/identification-of-an-anca-associated-vasculitis-cohort-using-deep-learning-and-electronic-health-records.bib",
      "citation_key": "Wang2025Identificationanca",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Characterizing Public Sentiments and Drug Interactions during COVID-19: A Pretrained Language Model and Network Analysis of Social Media Discourse",
      "authors": [
        "Wanxin Li",
        "Yining Hua",
        "Peilin Zhou",
        "Li Zhou",
        "Xin Xu",
        "Jie Yang"
      ],
      "year": 2025,
      "venue": "Journal of Medical Internet Research",
      "url": "https://www.jmir.org/2025/1/e63755/",
      "citation_page_url": "https://ylab.top/citation/characterizing-public-sentiments-and-drug-interactions-during-covid-19-a-pretrained-language-model-and-network-analysis-of-social-media-discourse/",
      "bibtex_url": "https://ylab.top/bib/characterizing-public-sentiments-and-drug-interactions-during-covid-19-a-pretrained-language-model-and-network-analysis-of-social-media-discourse.bib",
      "citation_key": "Li2025Characterizingpublic",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Probabilistic Medical Predictions of Large Language Models",
      "authors": [
        "Bowen Gu",
        "Rishi J. Desai",
        "Kueiyu Joshua Lin",
        "Jie Yang"
      ],
      "year": 2024,
      "venue": "npj Digital Medicine",
      "url": "https://www.nature.com/articles/s41746-024-01366-4",
      "citation_page_url": "https://ylab.top/citation/probabilistic-medical-predictions-of-large-language-models/",
      "bibtex_url": "https://ylab.top/bib/probabilistic-medical-predictions-of-large-language-models.bib",
      "citation_key": "Gu2024Probabilisticmedical",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Enhancing Postmarketing Surveillance of Medical Products with Large Language Models",
      "authors": [
        "Michael E Matheny",
        "Jie Yang",
        "Joshua C Smith",
        "Colin G Walsh",
        "Mohammed A Al-Garadi",
        "Sharon E Davis",
        "Keith Marsolo",
        "Daniel Fabbri",
        "Ruth Reeves",
        "Kevin Johnson",
        "Gerald Dal Pan",
        "Robert Ball",
        "Rishi Desai"
      ],
      "year": 2024,
      "venue": "JAMA Network Open",
      "url": "https://jamanetwork.com/journals/jamanetworkopen/fullarticle/2822418",
      "citation_page_url": "https://ylab.top/citation/enhancing-postmarketing-surveillance-of-medical-products-with-large-language-models/",
      "bibtex_url": "https://ylab.top/bib/enhancing-postmarketing-surveillance-of-medical-products-with-large-language-models.bib",
      "citation_key": "Matheny2024Enhancingpostmarketing",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Clinical Text Datasets for Medical Artificial Intelligence and Large Language Models — A Systematic Review",
      "authors": [
        "Jiageng Wu",
        "Xiaocong Liu",
        "Minghui Li",
        "Wanxin Li",
        "Zichang Su",
        "Lucas Garay",
        "Zhiyun Zhang",
        "Yujie Zhang",
        "Qingcheng Zeng",
        "Jie Shen",
        "Changzheng Yuan",
        "Jie Yang"
      ],
      "year": 2024,
      "venue": "New England Journal of Medicine AI",
      "url": "https://ai.nejm.org/doi/full/10.1056/AIra2400012",
      "citation_page_url": "https://ylab.top/citation/clinical-text-datasets-for-medical-artificial-intelligence-and-large-language-models-a-systematic-review/",
      "bibtex_url": "https://ylab.top/bib/clinical-text-datasets-for-medical-artificial-intelligence-and-large-language-models-a-systematic-review.bib",
      "citation_key": "Wu2024Clinicaltext",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Streamlining Social Media Information Retrieval for Public Health Research with Deep Learning",
      "authors": [
        "Yining Hua",
        "Jiageng Wu",
        "Shixu Lin",
        "Minghui Li",
        "Yujie Zhang",
        "Dinah Foer",
        "Siwen Wang",
        "Peilin Zhou",
        "Jie Yang",
        "Li Zhou"
      ],
      "year": 2024,
      "venue": "Journal of the American Medical Informatics Association",
      "url": "https://academic.oup.com/jamia/article/31/7/1569/7667306",
      "citation_page_url": "https://ylab.top/citation/streamlining-social-media-information-retrieval-for-public-health-research-with-deep-learning/",
      "bibtex_url": "https://ylab.top/bib/streamlining-social-media-information-retrieval-for-public-health-research-with-deep-learning.bib",
      "citation_key": "Hua2024Streamliningsocial",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Guiding Clinical Reasoning with Large Language Models via Knowledge Seeds",
      "authors": [
        "Jiageng Wu",
        "Xian Wu",
        "Jie Yang"
      ],
      "year": 2024,
      "venue": "International Joint Conference on Artificial Intelligence (IJCAI)",
      "url": "https://arxiv.org/abs/2403.06609",
      "citation_page_url": "https://ylab.top/citation/guiding-clinical-reasoning-with-large-language-models-via-knowledge-seeds/",
      "bibtex_url": "https://ylab.top/bib/guiding-clinical-reasoning-with-large-language-models-via-knowledge-seeds.bib",
      "citation_key": "Wu2024Guidingclinical",
      "bibtex_type": "inproceedings",
      "doi": null
    },
    {
      "title": "Large Language Models Leverage External Knowledge to Extend Clinical Insight Beyond Language Boundaries",
      "authors": [
        "Jiageng Wu",
        "Xian Wu",
        "Zhaopeng Qiu",
        "Minghui Li",
        "Shixu Lin",
        "Yingying Zhang",
        "Yefeng Zheng",
        "Changzheng Yuan",
        "Jie Yang"
      ],
      "year": 2024,
      "venue": "Journal of the American Medical Informatics Association",
      "url": "https://academic.oup.com/jamia/article/31/6/1394/7659846",
      "citation_page_url": "https://ylab.top/citation/large-language-models-leverage-external-knowledge-to-extend-clinical-insight-beyond-language-boundaries/",
      "bibtex_url": "https://ylab.top/bib/large-language-models-leverage-external-knowledge-to-extend-clinical-insight-beyond-language-boundaries.bib",
      "citation_key": "Wu2024Largelanguage",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Revealing COVID-19's Social Dynamics: Diachronic Semantic Analysis of Vaccine and Symptom Discourse on Twitter",
      "authors": [
        "Zeqiang Wang",
        "Jiageng Wu",
        "Yuqi Wang",
        "Wei Wang",
        "Jie Yang",
        "Nishanth R Sastry",
        "Jon Johnson",
        "Suparna De"
      ],
      "year": 2024,
      "venue": "Conference on Empirical Methods in Natural Language Processing (EMNLP), Findings",
      "url": null,
      "citation_page_url": "https://ylab.top/citation/revealing-covid-19-s-social-dynamics-diachronic-semantic-analysis-of-vaccine-and-symptom-discourse-on-twitter/",
      "bibtex_url": "https://ylab.top/bib/revealing-covid-19-s-social-dynamics-diachronic-semantic-analysis-of-vaccine-and-symptom-discourse-on-twitter.bib",
      "citation_key": "Wang2024Revealingcovid",
      "bibtex_type": "inproceedings",
      "doi": null
    },
    {
      "title": "MedJourney: Benchmark and Evaluation of Large Language Models over Patient Clinical Journey",
      "authors": [
        "Xian Wu",
        "Yutian Zhao",
        "Yunyan Zhang",
        "Jiageng Wu",
        "Zhihong Zhu",
        "Yingying Zhang",
        "Yi Ouyang",
        "Ziheng Zhang",
        "Huimin Wang",
        "Zhenxi Lin",
        "Jie Yang"
      ],
      "year": 2024,
      "venue": "Conference on Neural Information Processing Systems (NeurIPS)",
      "url": "https://openreview.net/forum?id=LJ4sBAFoNX",
      "citation_page_url": "https://ylab.top/citation/medjourney-benchmark-and-evaluation-of-large-language-models-over-patient-clinical-journey/",
      "bibtex_url": "https://ylab.top/bib/medjourney-benchmark-and-evaluation-of-large-language-models-over-patient-clinical-journey.bib",
      "citation_key": "Wu2024Medjourneybenchmark",
      "bibtex_type": "inproceedings",
      "doi": null
    },
    {
      "title": "The Sexual and Gender-Diverse Face More Health Challenges During COVID-19: A Large-Scale Social Media Analysis with Natural Language Processing",
      "authors": [
        "Zhiyun Zhang",
        "Yining Hua",
        "Peilin Zhou",
        "Shixu Lin",
        "Minghui Li",
        "Yujie Zhang",
        "Li Zhou",
        "Yanhui Liao",
        "Jie Yang"
      ],
      "year": 2024,
      "venue": "Health Data Science",
      "url": "https://spj.science.org/doi/10.34133/hds.0127",
      "citation_page_url": "https://ylab.top/citation/the-sexual-and-gender-diverse-face-more-health-challenges-during-covid-19-a-large-scale-social-media-analysis-with-natural-language-processing/",
      "bibtex_url": "https://ylab.top/bib/the-sexual-and-gender-diverse-face-more-health-challenges-during-covid-19-a-large-scale-social-media-analysis-with-natural-language-processing.bib",
      "citation_key": "Zhang2024Sexualgender",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Uncovering Language Disparity of ChatGPT on Retinal Vascular Disease Classification: Cross-Sectional Study",
      "authors": [
        "Xiaocong Liu",
        "Jiageng Wu",
        "An Shao",
        "Wenyue Shen",
        "Panpan Ye",
        "Yao Wang",
        "Juan Ye",
        "Kai Jin",
        "Jie Yang"
      ],
      "year": 2024,
      "venue": "Journal of Medical Internet Research",
      "url": "https://www.jmir.org/2024/1/e51926",
      "citation_page_url": "https://ylab.top/citation/uncovering-language-disparity-of-chatgpt-on-retinal-vascular-disease-classification-cross-sectional-study/",
      "bibtex_url": "https://ylab.top/bib/uncovering-language-disparity-of-chatgpt-on-retinal-vascular-disease-classification-cross-sectional-study.bib",
      "citation_key": "Liu2024Uncoveringlanguage",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "GreenPLM: Cross-Lingual Transfer of Monolingual Pre-Trained Language Models at Almost No Cost",
      "authors": [
        "Qingcheng Zeng",
        "Lucas Garay",
        "Peilin Zhou",
        "Dading Chong",
        "Yining Hua",
        "Jiageng Wu",
        "Yikang Pan",
        "Han Zhou",
        "Rob Voigt",
        "Jie Yang"
      ],
      "year": 2023,
      "venue": "International Joint Conference on Artificial Intelligence (IJCAI)",
      "url": "https://arxiv.org/abs/2211.06993",
      "citation_page_url": "https://ylab.top/citation/greenplm-cross-lingual-transfer-of-monolingual-pre-trained-language-models-at-almost-no-cost/",
      "bibtex_url": "https://ylab.top/bib/greenplm-cross-lingual-transfer-of-monolingual-pre-trained-language-models-at-almost-no-cost.bib",
      "citation_key": "Zeng2023Greenplmcross",
      "bibtex_type": "inproceedings",
      "doi": null
    },
    {
      "title": "Efficacy of WeChat-Based Online Smoking Cessation Intervention ('WeChat WeQuit') in China: A Randomised Controlled Trial",
      "authors": [
        "Jinsong Tang",
        "Jie Yang",
        "Yi Liu",
        "Xiaocong Liu",
        "Ling Li",
        "Yunkai Sun",
        "Jieyin Jin",
        "Yehong Fang",
        "Zitang Zhou",
        "Yunfei Wang",
        "Yueheng Liu",
        "Wei Chen",
        "Ann McNeill",
        "Brian Kelly",
        "Joanna E Cohen",
        "Yanhui Liao"
      ],
      "year": 2023,
      "venue": "eClinicalMedicine",
      "url": "https://www.thelancet.com/journals/eclinm/article/PIIS2589-5370(23)00186-4/fulltext",
      "citation_page_url": "https://ylab.top/citation/efficacy-of-wechat-based-online-smoking-cessation-intervention-wechat-wequit-in-china-a-randomised-controlled-trial/",
      "bibtex_url": "https://ylab.top/bib/efficacy-of-wechat-based-online-smoking-cessation-intervention-wechat-wequit-in-china-a-randomised-controlled-trial.bib",
      "citation_key": "Tang2023Efficacywechat",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Exploring Social Media for Early Detection of Depression in COVID-19 Patients",
      "authors": [
        "Jiageng Wu",
        "Xian Wu",
        "Yining Hua",
        "Shixu Lin",
        "Yefeng Zheng",
        "Jie Yang"
      ],
      "year": 2023,
      "venue": "The Web Conference (WWW)",
      "url": "https://arxiv.org/abs/2302.12044",
      "citation_page_url": "https://ylab.top/citation/exploring-social-media-for-early-detection-of-depression-in-covid-19-patients/",
      "bibtex_url": "https://ylab.top/bib/exploring-social-media-for-early-detection-of-depression-in-covid-19-patients.bib",
      "citation_key": "Wu2023Exploringsocial",
      "bibtex_type": "inproceedings",
      "doi": null
    },
    {
      "title": "Trend and Co-occurrence Network of COVID-19 Symptoms Through Large-Scale Social Media: Infoveillance Study",
      "authors": [
        "Jiageng Wu",
        "Lumin Wang",
        "Yining Hua",
        "Minghui Li",
        "Li Zhou",
        "David W Bates",
        "Jie Yang"
      ],
      "year": 2023,
      "venue": "Journal of Medical Internet Research",
      "url": "https://www.jmir.org/2023/1/e45419",
      "citation_page_url": "https://ylab.top/citation/trend-and-co-occurrence-network-of-covid-19-symptoms-through-large-scale-social-media-infoveillance-study/",
      "bibtex_url": "https://ylab.top/bib/trend-and-co-occurrence-network-of-covid-19-symptoms-through-large-scale-social-media-infoveillance-study.bib",
      "citation_key": "Wu2023Trendco",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Better Pay Attention Whilst Fuzzing",
      "authors": [
        "Shunkai Zhu",
        "Jingyi Wang",
        "Jun Sun",
        "Jie Yang",
        "Xingwei Lin",
        "Liyi Zhang",
        "Peng Cheng"
      ],
      "year": 2023,
      "venue": "IEEE Transactions on Software Engineering",
      "url": null,
      "citation_page_url": "https://ylab.top/citation/better-pay-attention-whilst-fuzzing/",
      "bibtex_url": "https://ylab.top/bib/better-pay-attention-whilst-fuzzing.bib",
      "citation_key": "Zhu2023Betterpay",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Transforming Retinal Vascular Disease Classification: A Comprehensive Analysis of ChatGPT's Performance and Inference Abilities",
      "authors": [
        "Xiaocong Liu",
        "Jiageng Wu",
        "An Shao",
        "Wenyue Shen",
        "Panpan Ye",
        "Yao Wang",
        "Juan Ye",
        "Kai Jin",
        "Jie Yang"
      ],
      "year": 2023,
      "venue": "American Medical Informatics Association Annual Symposium (AMIA)",
      "url": null,
      "citation_page_url": "https://ylab.top/citation/transforming-retinal-vascular-disease-classification-a-comprehensive-analysis-of-chatgpt-s-performance-and-inference-abilities/",
      "bibtex_url": "https://ylab.top/bib/transforming-retinal-vascular-disease-classification-a-comprehensive-analysis-of-chatgpt-s-performance-and-inference-abilities.bib",
      "citation_key": "Liu2023Transformingretinal",
      "bibtex_type": "inproceedings",
      "doi": null
    },
    {
      "title": "YATO: Yet Another Deep Learning Based Text Analysis Open Toolkit",
      "authors": [
        "Zeqiang Wang",
        "Yile Wang",
        "Jiageng Wu",
        "Zhiyang Teng",
        "Jie Yang"
      ],
      "year": 2023,
      "venue": "Conference on Empirical Methods in Natural Language Processing (EMNLP), Demo",
      "url": "https://arxiv.org/abs/2209.13877",
      "citation_page_url": "https://ylab.top/citation/yato-yet-another-deep-learning-based-text-analysis-open-toolkit/",
      "bibtex_url": "https://ylab.top/bib/yato-yet-another-deep-learning-based-text-analysis-open-toolkit.bib",
      "citation_key": "Wang2023Yatoyet",
      "bibtex_type": "inproceedings",
      "doi": null
    },
    {
      "title": "Genetically Predicted Sex Hormone Levels and Health Outcomes: Phenome-Wide Mendelian Randomization Investigation",
      "authors": [
        "Shuai Yuan",
        "Lijuan Wang",
        "Jing Sun",
        "Lili Yu",
        "Xuan Zhou",
        "Jie Yang",
        "Yimin Zhu",
        "Dipender Gill",
        "Stephen Burgess",
        "Joshua C Denny"
      ],
      "year": 2022,
      "venue": "International Journal of Epidemiology",
      "url": "https://academic.oup.com/ije/article/51/6/1931/6590882",
      "citation_page_url": "https://ylab.top/citation/genetically-predicted-sex-hormone-levels-and-health-outcomes-phenome-wide-mendelian-randomization-investigation/",
      "bibtex_url": "https://ylab.top/bib/genetically-predicted-sex-hormone-levels-and-health-outcomes-phenome-wide-mendelian-randomization-investigation.bib",
      "citation_key": "Yuan2022Geneticallypredicted",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "METS-CoV: A Dataset of Medical Entity and Targeted Sentiment on COVID-19 Related Tweets",
      "authors": [
        "Peilin Zhou",
        "Zeqiang Wang",
        "Dading Chong",
        "Zhijiang Guo",
        "Yining Hua",
        "Zichang Su",
        "Zhiyang Teng",
        "Jiageng Wu",
        "Jie Yang"
      ],
      "year": 2022,
      "venue": "Conference on Neural Information Processing Systems (NeurIPS)",
      "url": "https://openreview.net/forum?id=GP1Ncd8nTgn",
      "citation_page_url": "https://ylab.top/citation/mets-cov-a-dataset-of-medical-entity-and-targeted-sentiment-on-covid-19-related-tweets/",
      "bibtex_url": "https://ylab.top/bib/mets-cov-a-dataset-of-medical-entity-and-targeted-sentiment-on-covid-19-related-tweets.bib",
      "citation_key": "Zhou2022Metscov",
      "bibtex_type": "inproceedings",
      "doi": null
    },
    {
      "title": "Tracking the Impact of COVID-19 and Lockdown Policies on Public Mental Health Using Social Media: Infoveillance Study",
      "authors": [
        "Minghui Li",
        "Yining Hua",
        "Yanhui Liao",
        "Li Zhou",
        "Xue Li",
        "Ling Wang",
        "Jie Yang"
      ],
      "year": 2022,
      "venue": "Journal of Medical Internet Research",
      "url": "https://www.jmir.org/2022/10/e39676/",
      "citation_page_url": "https://ylab.top/citation/tracking-the-impact-of-covid-19-and-lockdown-policies-on-public-mental-health-using-social-media-infoveillance-study/",
      "bibtex_url": "https://ylab.top/bib/tracking-the-impact-of-covid-19-and-lockdown-policies-on-public-mental-health-using-social-media-infoveillance-study.bib",
      "citation_key": "Li2022Trackingimpact",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Low-resource Accent Classification in Geographically-Proximate Settings: A Forensic and Sociophonetics Perspective",
      "authors": [
        "Qingcheng Zeng",
        "Dading Chong",
        "Peilin Zhou",
        "Jie Yang"
      ],
      "year": 2022,
      "venue": "Annual Conference of the International Speech Communication Association (INTERSPEECH)",
      "url": "https://arxiv.org/abs/2206.12759",
      "citation_page_url": "https://ylab.top/citation/low-resource-accent-classification-in-geographically-proximate-settings-a-forensic-and-sociophonetics-perspective/",
      "bibtex_url": "https://ylab.top/bib/low-resource-accent-classification-in-geographically-proximate-settings-a-forensic-and-sociophonetics-perspective.bib",
      "citation_key": "Zeng2022Lowresource",
      "bibtex_type": "inproceedings",
      "doi": null
    },
    {
      "title": "Natural Language Processing to Identify Abnormal Breast, Lung, and Cervical Cancer Screening Test Results from Unstructured Reports to Support Timely Follow-up",
      "authors": [
        "Courtney J Diamond",
        "John Laurentiev",
        "Jie Yang",
        "Amy Wint",
        "Kimberly A Harris",
        "Tin H Dang",
        "Amrita Mecker",
        "Emily B Carpenter",
        "Anna N Tosteson",
        "Adam Wright"
      ],
      "year": 2022,
      "venue": "Studies in Health Technology and Informatics",
      "url": "https://ebooks.iospress.nl/doi/10.3233/SHTI220112",
      "citation_page_url": "https://ylab.top/citation/natural-language-processing-to-identify-abnormal-breast-lung-and-cervical-cancer-screening-test-results-from-unstructured-reports-to-support-timely-follow-up/",
      "bibtex_url": "https://ylab.top/bib/natural-language-processing-to-identify-abnormal-breast-lung-and-cervical-cancer-screening-test-results-from-unstructured-reports-to-support-timely-follow-up.bib",
      "citation_key": "Diamond2022Naturallanguage",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Using Twitter Data to Understand Public Perceptions of Approved versus Off-label Use for COVID-19-related Medications",
      "authors": [
        "Yining Hua",
        "Hang Jiang",
        "Shixu Lin",
        "Jie Yang",
        "Joseph M Plasek",
        "David W Bates",
        "Li Zhou"
      ],
      "year": 2022,
      "venue": "Journal of the American Medical Informatics Association",
      "url": "https://academic.oup.com/jamia/article/29/10/1668/6625661",
      "citation_page_url": "https://ylab.top/citation/using-twitter-data-to-understand-public-perceptions-of-approved-versus-off-label-use-for-covid-19-related-medications/",
      "bibtex_url": "https://ylab.top/bib/using-twitter-data-to-understand-public-perceptions-of-approved-versus-off-label-use-for-covid-19-related-medications.bib",
      "citation_key": "Hua2022Twitterdata",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Development and Validation of a Deep Learning Model for Earlier Detection of Cognitive Decline from Clinical Notes in Electronic Health Records",
      "authors": [
        "Liqin Wang",
        "John Laurentiev",
        "Jie Yang",
        "Ying-Chih Lo",
        "Rebecca E. Amariglio",
        "Deborah Blacker",
        "Reisa A. Sperling",
        "Gad A. Marshall",
        "Li Zhou"
      ],
      "year": 2021,
      "venue": "JAMA Network Open",
      "url": "https://jamanetwork.com/journals/jamanetworkopen/fullarticle/2786292",
      "citation_page_url": "https://ylab.top/citation/development-and-validation-of-a-deep-learning-model-for-earlier-detection-of-cognitive-decline-from-clinical-notes-in-electronic-health-records/",
      "bibtex_url": "https://ylab.top/bib/development-and-validation-of-a-deep-learning-model-for-earlier-detection-of-cognitive-decline-from-clinical-notes-in-electronic-health-records.bib",
      "citation_key": "Wang2021Developmentvalidation",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Assessing the Prognostic Significance of Tumor-Infiltrating Lymphocytes in Patients With Melanoma Using Pathologic Features Identified by Natural Language Processing",
      "authors": [
        "Jie Yang",
        "John Lian",
        "Yen Po Chin",
        "Liqin Wang",
        "Anna Lian",
        "George F. Murphy",
        "Li Zhou"
      ],
      "year": 2021,
      "venue": "JAMA Network Open",
      "url": "https://jamanetwork.com/journals/jamanetworkopen/fullarticle/2784429",
      "citation_page_url": "https://ylab.top/citation/assessing-the-prognostic-significance-of-tumor-infiltrating-lymphocytes-in-patients-with-melanoma-using-pathologic-features-identified-by-natural-language-processing/",
      "bibtex_url": "https://ylab.top/bib/assessing-the-prognostic-significance-of-tumor-infiltrating-lymphocytes-in-patients-with-melanoma-using-pathologic-features-identified-by-natural-language-processing.bib",
      "citation_key": "Yang2021Assessingprognostic",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Sentiment Correlation in Financial News Networks and Associated Market Movements",
      "authors": [
        "Xingchen Wan",
        "Jie Yang",
        "Slavi Marinov",
        "Jan-Peter Calliess",
        "Stefan Zohren",
        "Xiaowen Dong"
      ],
      "year": 2021,
      "venue": "Scientific Reports",
      "url": "https://www.nature.com/articles/s41598-021-82338-3",
      "citation_page_url": "https://ylab.top/citation/sentiment-correlation-in-financial-news-networks-and-associated-market-movements/",
      "bibtex_url": "https://ylab.top/bib/sentiment-correlation-in-financial-news-networks-and-associated-market-movements.bib",
      "citation_key": "Wan2021Sentimentcorrelation",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Multilevel Follow-up of Cancer Screening (mFOCUS): Protocol for a Multilevel Intervention to Improve the Follow-up of Abnormal Cancer Screening Test Results",
      "authors": [
        "Jennifer S Haas",
        "Steven J Atlas",
        "Adam Wright",
        "E John Orav",
        "David G Aman",
        "Erica S Breslau",
        "Timothy E Burdick",
        "Emily Carpenter",
        "Frank Chang",
        "Tin Dang",
        "Jie Yang",
        "Li Zhou",
        "Anna Tosteson"
      ],
      "year": 2021,
      "venue": "Contemporary Clinical Trials",
      "url": "https://www.sciencedirect.com/science/article/pii/S155171442100269X",
      "citation_page_url": "https://ylab.top/citation/multilevel-follow-up-of-cancer-screening-mfocus-protocol-for-a-multilevel-intervention-to-improve-the-follow-up-of-abnormal-cancer-screening-test-results/",
      "bibtex_url": "https://ylab.top/bib/multilevel-follow-up-of-cancer-screening-mfocus-protocol-for-a-multilevel-intervention-to-improve-the-follow-up-of-abnormal-cancer-screening-test-results.bib",
      "citation_key": "Haas2021Multilevelfollow",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Development and Validation of a Deep Learning Model for Detection of Allergic Reactions Using Safety Event Reports Across Hospitals",
      "authors": [
        "Jie Yang",
        "Liqin Wang",
        "Neelam A. Phadke",
        "Paige G. Wickner",
        "Christian M. Mancini",
        "Kimberly G. Blumenthal",
        "Li Zhou"
      ],
      "year": 2020,
      "venue": "JAMA Network Open",
      "url": "https://jamanetwork.com/journals/jamanetworkopen/fullarticle/2772992",
      "citation_page_url": "https://ylab.top/citation/development-and-validation-of-a-deep-learning-model-for-detection-of-allergic-reactions-using-safety-event-reports-across-hospitals/",
      "bibtex_url": "https://ylab.top/bib/development-and-validation-of-a-deep-learning-model-for-detection-of-allergic-reactions-using-safety-event-reports-across-hospitals.bib",
      "citation_key": "Yang2020Developmentvalidation",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Deep Learning to Detect Allergy Events from Hospital Safety Reports",
      "authors": [
        "Jie Yang",
        "Liqin Wang",
        "Neelam A Phadke",
        "Paige G Wickner",
        "Christian M Mancini",
        "Kimberly G Blumenthal",
        "Li Zhou"
      ],
      "year": 2020,
      "venue": "American Medical Informatics Association Annual Symposium (AMIA)",
      "url": null,
      "citation_page_url": "https://ylab.top/citation/deep-learning-to-detect-allergy-events-from-hospital-safety-reports/",
      "bibtex_url": "https://ylab.top/bib/deep-learning-to-detect-allergy-events-from-hospital-safety-reports.bib",
      "citation_key": "Yang2020Deeplearning",
      "bibtex_type": "inproceedings",
      "doi": null
    },
    {
      "title": "Implementing an IT-Based Intervention to Improve Follow-up Rates of Abnormal Cancer Screening Results: the mFOCUS Trial",
      "authors": [
        "Courtney Diamond",
        "Steven Atlas",
        "Tin Dang",
        "Jie Yang",
        "Li Zhou",
        "Sanja Percac-Lima",
        "Amy Wint",
        "Kimberly Harris",
        "John Orav",
        "Erica Breslau",
        "Shoshana Hort",
        "Anna Tosteson",
        "Jennifer Haas",
        "Adam Wright"
      ],
      "year": 2020,
      "venue": "American Medical Informatics Association Annual Symposium (AMIA)",
      "url": null,
      "citation_page_url": "https://ylab.top/citation/implementing-an-it-based-intervention-to-improve-follow-up-rates-of-abnormal-cancer-screening-results-the-mfocus-trial/",
      "bibtex_url": "https://ylab.top/bib/implementing-an-it-based-intervention-to-improve-follow-up-rates-of-abnormal-cancer-screening-results-the-mfocus-trial.bib",
      "citation_key": "Diamond2020Implementingit",
      "bibtex_type": "inproceedings",
      "doi": null
    },
    {
      "title": "Allergic Reactions in Two Academic Medical Centers",
      "authors": [
        "Neelam A. Phadke",
        "Li Zhou",
        "Christian M. Mancini",
        "Jie Yang",
        "Liqin Wang",
        "Paige Wickner",
        "Xiaoqing Fu",
        "Kimberly G. Blumenthal"
      ],
      "year": 2020,
      "venue": "Journal of General Internal Medicine",
      "url": "https://link.springer.com/article/10.1007/s11606-020-06190-6",
      "citation_page_url": "https://ylab.top/citation/allergic-reactions-in-two-academic-medical-centers/",
      "bibtex_url": "https://ylab.top/bib/allergic-reactions-in-two-academic-medical-centers.bib",
      "citation_key": "Phadke2020Allergicreactions",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Disparities in Outpatient Visits for Mental Health and/or Substance Use Disorders During the COVID-19 Surge and Partial Reopening in Massachusetts",
      "authors": [
        "Jie Yang",
        "Mary B. Landrum",
        "Li Zhou",
        "Alisa B Busch"
      ],
      "year": 2020,
      "venue": "General Hospital Psychiatry",
      "url": "https://www.sciencedirect.com/science/article/pii/S0163834320301407",
      "citation_page_url": "https://ylab.top/citation/disparities-in-outpatient-visits-for-mental-health-and-or-substance-use-disorders-during-the-covid-19-surge-and-partial-reopening-in-massachusetts/",
      "bibtex_url": "https://ylab.top/bib/disparities-in-outpatient-visits-for-mental-health-and-or-substance-use-disorders-during-the-covid-19-surge-and-partial-reopening-in-massachusetts.bib",
      "citation_key": "Yang2020Disparitiesoutpatient",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Lattice LSTM for Chinese Sentence Representation",
      "authors": [
        "Yue Zhang",
        "Yile Wang",
        "Jie Yang"
      ],
      "year": 2020,
      "venue": "IEEE/ACM Transactions on Audio, Speech, and Language Processing",
      "url": "https://ieeexplore.ieee.org/document/9082853",
      "citation_page_url": "https://ylab.top/citation/lattice-lstm-for-chinese-sentence-representation/",
      "bibtex_url": "https://ylab.top/bib/lattice-lstm-for-chinese-sentence-representation.bib",
      "citation_key": "Zhang2020Latticelstm",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Subword Encoding in Lattice LSTM for Chinese Word Segmentation",
      "authors": [
        "Jie Yang",
        "Yue Zhang",
        "Shuailong Liang"
      ],
      "year": 2019,
      "venue": "Annual Conference of the North American Chapter of the Association for Computational Linguistics (NAACL)",
      "url": "https://aclanthology.org/N19-1278/",
      "citation_page_url": "https://ylab.top/citation/subword-encoding-in-lattice-lstm-for-chinese-word-segmentation/",
      "bibtex_url": "https://ylab.top/bib/subword-encoding-in-lattice-lstm-for-chinese-word-segmentation.bib",
      "citation_key": "Yang2019Subwordencoding",
      "bibtex_type": "inproceedings",
      "doi": null
    },
    {
      "title": "Mining Clinical Phrases from Nursing Notes to Discover Risk Factors of Patient Deterioration",
      "authors": [
        "Zfania T. Korach",
        "Jie Yang",
        "Sarah Collins Rossetti",
        "Kenrick D. Cato",
        "Min-Jeoung Kang",
        "Christopher Knaplund",
        "Kumiko O. Schnock",
        "Jose P. Garcia",
        "Haomiao Jia",
        "Jessica M. Schwartz",
        "Li Zhou"
      ],
      "year": 2019,
      "venue": "International Journal of Medical Informatics",
      "url": "https://www.sciencedirect.com/science/article/pii/S1386505619309682",
      "citation_page_url": "https://ylab.top/citation/mining-clinical-phrases-from-nursing-notes-to-discover-risk-factors-of-patient-deterioration/",
      "bibtex_url": "https://ylab.top/bib/mining-clinical-phrases-from-nursing-notes-to-discover-risk-factors-of-patient-deterioration.bib",
      "citation_key": "Korach2019Miningclinical",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "From Genesis to Creole Language: Transfer Learning for Singlish Universal Dependencies Parsing and POS Tagging",
      "authors": [
        "Hongming Wang",
        "Jie Yang",
        "Yue Zhang"
      ],
      "year": 2019,
      "venue": "ACM Transactions on Asian and Low-Resource Language Information Processing",
      "url": "https://dl.acm.org/doi/10.1145/3321128",
      "citation_page_url": "https://ylab.top/citation/from-genesis-to-creole-language-transfer-learning-for-singlish-universal-dependencies-parsing-and-pos-tagging/",
      "bibtex_url": "https://ylab.top/bib/from-genesis-to-creole-language-transfer-learning-for-singlish-universal-dependencies-parsing-and-pos-tagging.bib",
      "citation_key": "Wang2019Genesiscreole",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Design Challenges and Misconceptions in Neural Sequence Labeling",
      "authors": [
        "Jie Yang",
        "Shuailong Liang",
        "Yue Zhang"
      ],
      "year": 2018,
      "venue": "International Conference on Computational Linguistics (COLING)",
      "url": "https://aclanthology.org/C18-1327/",
      "citation_page_url": "https://ylab.top/citation/design-challenges-and-misconceptions-in-neural-sequence-labeling/",
      "bibtex_url": "https://ylab.top/bib/design-challenges-and-misconceptions-in-neural-sequence-labeling.bib",
      "citation_key": "Yang2018Designchallenges",
      "bibtex_type": "inproceedings",
      "doi": null
    },
    {
      "title": "NCRF++: An Open-source Neural Sequence Labeling Toolkit",
      "authors": [
        "Jie Yang",
        "Yue Zhang"
      ],
      "year": 2018,
      "venue": "Annual Meeting of the Association for Computational Linguistics (ACL), Demo",
      "url": "https://aclanthology.org/P18-4013/",
      "citation_page_url": "https://ylab.top/citation/ncrf-an-open-source-neural-sequence-labeling-toolkit/",
      "bibtex_url": "https://ylab.top/bib/ncrf-an-open-source-neural-sequence-labeling-toolkit.bib",
      "citation_key": "Yang2018Ncrfopen",
      "bibtex_type": "inproceedings",
      "doi": null
    },
    {
      "title": "Chinese NER Using Lattice LSTM",
      "authors": [
        "Yue Zhang",
        "Jie Yang"
      ],
      "year": 2018,
      "venue": "Annual Meeting of the Association for Computational Linguistics (ACL)",
      "url": "https://aclanthology.org/P18-1144/",
      "citation_page_url": "https://ylab.top/citation/chinese-ner-using-lattice-lstm/",
      "bibtex_url": "https://ylab.top/bib/chinese-ner-using-lattice-lstm.bib",
      "citation_key": "Zhang2018Chinesener",
      "bibtex_type": "inproceedings",
      "doi": null
    },
    {
      "title": "YEDDA: A Lightweight Collaborative Text Span Annotation Tool",
      "authors": [
        "Jie Yang",
        "Yue Zhang",
        "Linwei Li",
        "Xingxuan Li"
      ],
      "year": 2018,
      "venue": "Annual Meeting of the Association for Computational Linguistics (ACL), Demo",
      "url": "https://aclanthology.org/P18-4006/",
      "citation_page_url": "https://ylab.top/citation/yedda-a-lightweight-collaborative-text-span-annotation-tool/",
      "bibtex_url": "https://ylab.top/bib/yedda-a-lightweight-collaborative-text-span-annotation-tool.bib",
      "citation_key": "Yang2018Yeddalightweight",
      "bibtex_type": "inproceedings",
      "doi": null
    },
    {
      "title": "Neural Word Segmentation with Rich Pretraining",
      "authors": [
        "Jie Yang",
        "Yue Zhang",
        "Fei Dong"
      ],
      "year": 2017,
      "venue": "Annual Meeting of the Association for Computational Linguistics (ACL)",
      "url": "https://aclanthology.org/P17-1078/",
      "citation_page_url": "https://ylab.top/citation/neural-word-segmentation-with-rich-pretraining/",
      "bibtex_url": "https://ylab.top/bib/neural-word-segmentation-with-rich-pretraining.bib",
      "citation_key": "Yang2017Neuralword",
      "bibtex_type": "inproceedings",
      "doi": null
    },
    {
      "title": "Universal Dependencies Parsing for Colloquial Singaporean English",
      "authors": [
        "Hongmin Wang",
        "Yue Zhang",
        "Guang Yow Leonard Chan",
        "Jie Yang",
        "Hai Leong Chieu"
      ],
      "year": 2017,
      "venue": "Annual Meeting of the Association for Computational Linguistics (ACL)",
      "url": "https://aclanthology.org/P17-1159/",
      "citation_page_url": "https://ylab.top/citation/universal-dependencies-parsing-for-colloquial-singaporean-english/",
      "bibtex_url": "https://ylab.top/bib/universal-dependencies-parsing-for-colloquial-singaporean-english.bib",
      "citation_key": "Wang2017Universaldependencies",
      "bibtex_type": "inproceedings",
      "doi": null
    },
    {
      "title": "Attention-based Recurrent Convolutional Neural Network for Automatic Essay Scoring",
      "authors": [
        "Fei Dong",
        "Yue Zhang",
        "Jie Yang"
      ],
      "year": 2017,
      "venue": "Conference on Computational Natural Language Learning (CoNLL)",
      "url": "https://aclanthology.org/K17-1017/",
      "citation_page_url": "https://ylab.top/citation/attention-based-recurrent-convolutional-neural-network-for-automatic-essay-scoring/",
      "bibtex_url": "https://ylab.top/bib/attention-based-recurrent-convolutional-neural-network-for-automatic-essay-scoring.bib",
      "citation_key": "Dong2017Attentionbased",
      "bibtex_type": "inproceedings",
      "doi": null
    },
    {
      "title": "Neural Reranking for Named Entity Recognition",
      "authors": [
        "Jie Yang",
        "Yue Zhang",
        "Fei Dong"
      ],
      "year": 2017,
      "venue": "Recent Advances in Natural Language Processing (RANLP)",
      "url": "https://aclanthology.org/R17-1101/",
      "citation_page_url": "https://ylab.top/citation/neural-reranking-for-named-entity-recognition/",
      "bibtex_url": "https://ylab.top/bib/neural-reranking-for-named-entity-recognition.bib",
      "citation_key": "Yang2017Neuralreranking",
      "bibtex_type": "inproceedings",
      "doi": null
    },
    {
      "title": "Combining Discrete and Neural Features for Sequence Labeling",
      "authors": [
        "Jie Yang",
        "Zhiyang Teng",
        "Meishan Zhang",
        "Yue Zhang"
      ],
      "year": 2016,
      "venue": "International Conference on Intelligent Text Processing and Computational Linguistics (CICLing)",
      "url": "https://arxiv.org/abs/1708.07279",
      "citation_page_url": "https://ylab.top/citation/combining-discrete-and-neural-features-for-sequence-labeling/",
      "bibtex_url": "https://ylab.top/bib/combining-discrete-and-neural-features-for-sequence-labeling.bib",
      "citation_key": "Yang2016Combiningdiscrete",
      "bibtex_type": "inproceedings",
      "doi": null
    },
    {
      "title": "LibN3L: A Lightweight Package for Neural NLP",
      "authors": [
        "Meishan Zhang",
        "Jie Yang",
        "Zhiyang Teng",
        "Yue Zhang"
      ],
      "year": 2016,
      "venue": "Language Resources and Evaluation Conference (LREC)",
      "url": "https://aclanthology.org/L16-1034/",
      "citation_page_url": "https://ylab.top/citation/libn3l-a-lightweight-package-for-neural-nlp/",
      "bibtex_url": "https://ylab.top/bib/libn3l-a-lightweight-package-for-neural-nlp.bib",
      "citation_key": "Zhang2016Libn3llightweight",
      "bibtex_type": "inproceedings",
      "doi": null
    },
    {
      "title": "Effects of Defects and Thermal Treatment on the Properties of Graphene",
      "authors": [
        "Kunpeng Jia",
        "Yajuan Su",
        "Yang Chen",
        "Jun Luo",
        "Jie Yang",
        "Peng Lv",
        "Zihan Zhang",
        "Huilong Zhu",
        "Chao Zhao",
        "Tianchun Ye"
      ],
      "year": 2015,
      "venue": "Vacuum",
      "url": "https://www.sciencedirect.com/science/article/pii/S0042207X15000949",
      "citation_page_url": "https://ylab.top/citation/effects-of-defects-and-thermal-treatment-on-the-properties-of-graphene/",
      "bibtex_url": "https://ylab.top/bib/effects-of-defects-and-thermal-treatment-on-the-properties-of-graphene.bib",
      "citation_key": "Jia2015Effectsdefects",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Hysteresis Analysis of Graphene Transistor Under Repeated Test and Gate Voltage Stress",
      "authors": [
        "Jie Yang",
        "Kunpeng Jia",
        "Yajuan Su",
        "Yang Chen",
        "Chao Zhao"
      ],
      "year": 2014,
      "venue": "Journal of Semiconductors",
      "url": "https://iopscience.iop.org/article/10.1088/1674-4926/35/9/094003",
      "citation_page_url": "https://ylab.top/citation/hysteresis-analysis-of-graphene-transistor-under-repeated-test-and-gate-voltage-stress/",
      "bibtex_url": "https://ylab.top/bib/hysteresis-analysis-of-graphene-transistor-under-repeated-test-and-gate-voltage-stress.bib",
      "citation_key": "Yang2014Hysteresisanalysis",
      "bibtex_type": "article",
      "doi": null
    },
    {
      "title": "Stability Analysis of a Back-gate Graphene Transistor in Air Environment",
      "authors": [
        "Kunpeng Jia",
        "Jie Yang",
        "Yajuan Su",
        "Pengfei Nie",
        "Jian Zhong",
        "Qingqing Liang",
        "Huilong Zhu"
      ],
      "year": 2013,
      "venue": "Journal of Semiconductors",
      "url": "https://iopscience.iop.org/article/10.1088/1674-4926/34/8/084004",
      "citation_page_url": "https://ylab.top/citation/stability-analysis-of-a-back-gate-graphene-transistor-in-air-environment/",
      "bibtex_url": "https://ylab.top/bib/stability-analysis-of-a-back-gate-graphene-transistor-in-air-environment.bib",
      "citation_key": "Jia2013Stabilityanalysis",
      "bibtex_type": "article",
      "doi": null
    }
  ]
}
